Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

79479327 .. 79479956

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCTGGGGTTTCATCTAAGCTAGTGCTTGATAAAACTGAGCAATTGCAAAAGGAACTCTCAGATCTCCAGTTCGAATATGACAGGGCAGTCTTCCTTTTGAAGATTGCTGATTCAACAGGTGAAGCAGCCAAGAAAAGGGATTCAAAGGTGCTTCCTGAAAATCCTGAAACTTCTGCTGCTGCCATCAAGAAGCAACATCCATTTAAACCAAAGGAAACCTGTCTGCCTGAAAATCCAGAAAGTGGCTATAAAGAAAGAGGAGAGTACAGATGTGACTGTTGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

5.86

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	138, 245
AgsI	TTSAA	3 cut(s)	103, 117, 147
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	128, 179, 182
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	140, 166, 169
BccI	CCATC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	23, 289
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	129, 180, 183
BlsI	GCNGC	3 cut(s)	130, 181, 184
BpiI	GAAGAC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 245
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	138, 245
BseMII	CTCAG	2 cut(s)	30, 75
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	140, 166, 169
BslI	CCNNNNNNNGG	2 cut(s)	138, 245
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	64
BspCNI	CTCAG	2 cut(s)	31, 74
BspT104I	TTCGAA	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	18, 39, 61
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	140, 166, 169
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	268
CviJI	RGCY	3 cut(s)	22, 131, 249
CviKI_1	RGCY	3 cut(s)	22, 131, 249
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	18, 39, 61
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	208
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
FaiI	YATR	2 cut(s)	81, 252
Fnu4HI	GCNGC	3 cut(s)	129, 180, 183
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	129, 180, 183
FspBI	CTAG	2 cut(s)	23, 289
GluI	GCNGC	3 cut(s)	129, 180, 183
GsuI	CTGGAG	1 cut(s)	53
HinfI	GANTC	2 cut(s)	113, 143
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	158, 167, 190, 239
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	49, 285
HpyF3I	CTNAG	3 cut(s)	18, 39, 61
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	70, 83, 105, 171, 180, 235, 243, 252
Lsp1109I	GCAGC	3 cut(s)	140, 166, 169
MaeI	CTAG	2 cut(s)	23, 289
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	85, 115
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	207
MunI	CAATTG	1 cut(s)	44
NdeII	GATC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	113, 143
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	130, 181, 184
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	129, 180, 183
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	4 cut(s)	24, 124, 153, 224
SfuI	TTCGAA	1 cut(s)	75
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	2 cut(s)	23, 289
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	113, 143
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	3 cut(s)	128, 179, 182
Tsp45I	GTSAC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	245
XspI	CTAG	2 cut(s)	23, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.