Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Forward (+)

80420125 .. 80434050

Gene Structure 13926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG587700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGACGACCGCCATGGGTCCTCCGCCTCCACTCTCCACAAACCCCGCCGACTCCGAAATCCTAGACAATGTGCCGATGGAGACCACCTCCCATTCCTCAACCCAAATGAAGCCCCCGATGGGGCCTCCACCTCCCAAAAACCCTAGTCCACCTCCTCCTCCTCCTCCCCAAAACCCTAACCCCACTCCACCCTCTACATCCACCACCGACTCCGAAACCGCGCCGCCGGAGACCTCTAAGCACCAATCCCAAGGCTTTGCCGTCCCTTATTCGATTCCTGAATGGAGCGGAGCTCCATGCCACCAGTTCCAGCTCGAGGTCCTCAAGGACGGCGCCATTGTCGACCAATTCAATGTGTATGAAAAAGGGGCTTACATGTTCGGCCGGGTCGACCTCTGCGATTTTGTTCTGGAGCACCCTACTATTTCTCGGTTCCATGCAGTGCTCCAGTTCAAGAGAAGTGGAGATGCGTACATCTATGACCTTGGCAGTACTCATGGTACTTTTGTTAACAAGAACCAGGTCAGTAAAAAGGTGTATGTGGACTTGCATGTTGGTGATGTCATTCGTTTTGGGCATTCATCTCGTCTATACATTTTCCAAGGACCGTCTGAGTTGATGCCACCAGAAAAAGACTTGAAAGTTTTAAGAGAGTACAAGATGCGTGAAGATATTTTAGATCAGCAGGCATCACTTCAACGAGCAAGACTTGAAGCTTCTCTTGCTGATGGCATCTCTTGGGGTATGGGAGAGGATGCCATTATAGAAGAAGCCGAGGATGATGGTGAGGAAGTAACTTGGCAAACATACAAAGGACAGCTTACGGAAAAGCAGATAAAAACCCGTGATAAAATAACTAAAAGAATGGAAAAGAGAATCCCACCAAGCTATAAGTTTCCATTCGACCAGGTATTCATATTGTTGGACTTCAACTACTTTGTTAGTTCGCATAGTGTCCCCATGAATGTGTTGGAGCTGCATGATTCTGTTGGAGTGGAGAAGGGATTTGAAGATGCAACATCAGTTCAAGGTAATGGTGGTTCAGAAGTTGGAGCTGCACGATTCTGTAGGCTTGGCATCTCCTTGAATATCTTTTTGTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

368

Amino Acids

40.88

Weight (kDa)

5.19

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	121 - 193	1.9e-09	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	125 - 192	3e-21	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	2 cut(s)	342, 390
AccII	CGCG	1 cut(s)	221
AciI	CCGC	6 cut(s)	9, 23, 45, 219, 224, 288
AcoI	YGGCCR	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	4 cut(s)	473, 493, 502, 656
AfiI	CCNNNNNNNGG	3 cut(s)	119, 120, 316
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	9 cut(s)	352, 454, 640, 698, 713, 931, 1010, 1028, 1087
AjnI	CCWGG	2 cut(s)	519, 906
AluBI	AGCT	7 cut(s)	293, 313, 716, 820, 888, 976, 1055
AluI	AGCT	7 cut(s)	293, 313, 716, 820, 888, 976, 1055
Alw21I	GWGCWC	3 cut(s)	295, 417, 447
Alw26I	GTCTC	2 cut(s)	74, 224
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	122, 382
ApeKI	GCWGC	2 cut(s)	976, 1055
AspLEI	GCGC	2 cut(s)	223, 335
AspS9I	GGNCC	4 cut(s)	17, 122, 319, 605
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	569, 797
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	17, 319, 605
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	3 cut(s)	295, 417, 447
BbvI	GCAGC	2 cut(s)	963, 1042
BccI	CCATC	4 cut(s)	70, 112, 722, 776
BceAI	ACGGC	2 cut(s)	245, 346
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	2 cut(s)	521, 908
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	74, 224
BfaI	CTAG	2 cut(s)	62, 144
BfmI	CTRYAG	1 cut(s)	1066
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	3 cut(s)	224, 977, 1056
BlsI	GCNGC	3 cut(s)	225, 978, 1057
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	3 cut(s)	386, 521, 908
Bme18I	GGWCC	3 cut(s)	17, 319, 605
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	4 cut(s)	17, 122, 319, 605
BmiI	GGNNCC	4 cut(s)	18, 123, 334, 434
BmrFI	CCNGG	3 cut(s)	386, 521, 908
BmsI	GCATC	8 cut(s)	457, 609, 651, 698, 741, 745, 1003, 1086
BplI	GAGNNNNNCTC	4 cut(s)	71, 103, 277, 309
BpmI	CTGGAG	2 cut(s)	431, 431
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	2 cut(s)	74, 224
BsaJI	CCNNGG	5 cut(s)	12, 250, 484, 601, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 120, 316
Bse1I	ACTGG	2 cut(s)	304, 448
BseBI	CCWGG	2 cut(s)	521, 908
BseDI	CCNNGG	5 cut(s)	12, 250, 484, 601, 774
BseGI	GGATG	3 cut(s)	197, 760, 784
BseLI	CCNNNNNNNGG	3 cut(s)	119, 120, 316
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	304, 448
BseRI	GAGGAG	4 cut(s)	144, 147, 150, 153
BseX3I	CGGCCG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	963, 1042
BsgI	GTGCAG	1 cut(s)	1041
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	2 cut(s)	9, 385
BshFI	GGCC	2 cut(s)	124, 384
BshNI	GGYRCC	1 cut(s)	332
BsiEI	CGRYCG	2 cut(s)	9, 385
BsiHKAI	GWGCWC	3 cut(s)	295, 417, 447
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	227, 385
BslFI	GGGAC	3 cut(s)	248, 941, 1084
BslI	CCNNNNNNNGG	3 cut(s)	119, 120, 316
BsmAI	GTCTC	2 cut(s)	74, 224
BsmFI	GGGAC	3 cut(s)	248, 941, 1084
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	124, 384
Bso31I	GGTCTC	2 cut(s)	74, 224
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	295, 417, 447
Bsp143I	GATC	1 cut(s)	679
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	6 cut(s)	9, 23, 45, 219, 224, 288
BspANI	GGCC	2 cut(s)	124, 384
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	18, 123, 334, 434
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	2 cut(s)	74, 224
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	304, 448
BssECI	CCNNGG	5 cut(s)	12, 250, 484, 601, 774
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	4 cut(s)	12, 250, 484, 601
Bst2UI	CCWGG	2 cut(s)	521, 908
Bst4CI	ACNGT	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	2 cut(s)	237, 612
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	197, 760, 784
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	223, 335
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	2 cut(s)	74, 224
BstMBI	GATC	1 cut(s)	679
BstMCI	CGRYCG	2 cut(s)	9, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	2 cut(s)	521, 908
BstNSI	RCATGY	2 cut(s)	379, 554
BstSCI	CCNGG	3 cut(s)	384, 519, 906
BstSFI	CTRYAG	1 cut(s)	1066
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	963, 1042
BstZI	CGGCCG	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	124, 384
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	197, 760, 784
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	687
CfoI	GCGC	2 cut(s)	223, 335
Cfr13I	GGNCC	4 cut(s)	17, 122, 319, 605
CsiI	ACCWGGT	2 cut(s)	519, 906
Csp6I	GTAC	4 cut(s)	472, 492, 501, 655
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	9 cut(s)	13, 297, 376, 437, 497, 551, 961, 980, 1104
CviQI	GTAC	4 cut(s)	472, 492, 501, 655
DdeI	CTNAG	2 cut(s)	237, 612
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	382
EagI	CGGCCG	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	293
EclXI	CGGCCG	1 cut(s)	382
Eco130I	CCWWGG	4 cut(s)	12, 250, 484, 601
Eco24I	GRGCYC	1 cut(s)	295
Eco31I	GGTCTC	2 cut(s)	74, 224
Eco47I	GGWCC	3 cut(s)	17, 319, 605
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	293
EcoO109I	RGGNCCY	3 cut(s)	17, 122, 319
EcoRII	CCWGG	2 cut(s)	519, 906
EcoT14I	CCWWGG	4 cut(s)	12, 250, 484, 601
EcoT38I	GRGCYC	1 cut(s)	295
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
ErhI	CCWWGG	4 cut(s)	12, 250, 484, 601
FaeI	CATG	9 cut(s)	16, 300, 379, 440, 500, 554, 964, 983, 1107
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 804, 836
FaqI	GGGAC	3 cut(s)	248, 941, 1084
FatI	CATG	9 cut(s)	12, 296, 375, 436, 496, 550, 960, 979, 1103
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	2 cut(s)	342, 390
Fnu4HI	GCNGC	3 cut(s)	224, 977, 1056
FokI	GGATG	3 cut(s)	184, 767, 791
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	224, 977, 1056
FspBI	CTAG	2 cut(s)	62, 144
GlaI	GCGC	2 cut(s)	222, 334
GluI	GCNGC	3 cut(s)	224, 977, 1056
GsuI	CTGGAG	2 cut(s)	431, 431
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	124, 384
HapII	CCGG	2 cut(s)	227, 385
HhaI	GCGC	2 cut(s)	223, 335
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	9 cut(s)	16, 300, 379, 440, 500, 554, 964, 983, 1107
Hin6I	GCGC	2 cut(s)	221, 333
HinP1I	GCGC	2 cut(s)	221, 333
HincII	GTYRAC	3 cut(s)	343, 391, 511
HindII	GTYRAC	3 cut(s)	343, 391, 511
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	6 cut(s)	50, 209, 274, 876, 983, 1062
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	227, 385
HphI	GGTGA	2 cut(s)	569, 797
Hpy166II	GTNNAC	5 cut(s)	149, 343, 391, 511, 544
Hpy188I	TCNGA	4 cut(s)	55, 214, 613, 1045
Hpy188III	TCNNGA	3 cut(s)	278, 410, 454
Hpy8I	GTNNAC	5 cut(s)	149, 343, 391, 511, 544
HpyAV	CCTTC	1 cut(s)	994
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	440, 550, 979, 1016, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	2 cut(s)	237, 612
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	9 cut(s)	16, 300, 379, 440, 500, 554, 964, 983, 1107
HspAI	GCGC	2 cut(s)	221, 333
KasI	GGCGCC	1 cut(s)	332
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	7 cut(s)	285, 290, 298, 412, 450, 973, 1052
Lsp1109I	GCAGC	2 cut(s)	963, 1042
LweI	GCATC	8 cut(s)	457, 609, 651, 698, 741, 745, 1003, 1086
MabI	ACCWGGT	2 cut(s)	519, 906
MaeI	CTAG	2 cut(s)	62, 144
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	1 cut(s)	681
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	1 cut(s)	679
MboII	GAAGA	3 cut(s)	680, 779, 1022
MhlI	GDGCHC	3 cut(s)	295, 417, 447
MluCI	AATT	1 cut(s)	347
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	44, 203
MmeI	TCCRAC	4 cut(s)	903, 951, 970, 1030
MseI	TTAA	2 cut(s)	510, 647
MslI	CAYNNNNRTG	2 cut(s)	555, 965
MspI	CCGG	2 cut(s)	227, 385
MspR9I	CCNGG	3 cut(s)	386, 521, 908
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	521, 908
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	722
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	9 cut(s)	16, 300, 379, 440, 500, 554, 964, 983, 1107
NlaIV	GGNNCC	4 cut(s)	18, 123, 334, 434
NmeAIII	GCCGAG	1 cut(s)	799
NspI	RCATGY	2 cut(s)	379, 554
PaeR7I	CTCGAG	1 cut(s)	314
PciI	ACATGT	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 396
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	4 cut(s)	274, 876, 983, 1062
PkrI	GCNGC	3 cut(s)	225, 978, 1057
PleI	GAGTC	2 cut(s)	44, 203
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	44, 203
PpuMI	RGGWCCY	2 cut(s)	17, 319
PscI	ACATGT	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	295
Psp5II	RGGWCCY	2 cut(s)	17, 319
Psp6I	CCWGG	2 cut(s)	519, 906
PspGI	CCWGG	2 cut(s)	519, 906
PspN4I	GGNNCC	4 cut(s)	18, 123, 334, 434
PspPI	GGNCC	4 cut(s)	17, 122, 319, 605
PspPPI	RGGWCCY	2 cut(s)	17, 319
PspXI	VCTCGAGB	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	1024, 1056
RsaI	GTAC	4 cut(s)	473, 493, 502, 656
RsaNI	GTAC	4 cut(s)	472, 492, 501, 655
RseI	CAYNNNNRTG	2 cut(s)	555, 965
SacI	GAGCTC	1 cut(s)	295
SalI	GTCGAC	2 cut(s)	341, 389
SaqAI	TTAA	2 cut(s)	510, 647
SatI	GCNGC	3 cut(s)	224, 977, 1056
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	4 cut(s)	17, 122, 319, 605
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	2 cut(s)	44, 203
ScrFI	CCNGG	3 cut(s)	386, 521, 908
SduI	GDGCHC	3 cut(s)	295, 417, 447
SexAI	ACCWGGT	2 cut(s)	519, 906
SfaNI	GCATC	8 cut(s)	457, 609, 651, 698, 741, 745, 1003, 1086
SfcI	CTRYAG	1 cut(s)	1066
SfoI	GGCGCC	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	3 cut(s)	17, 319, 605
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	555, 965
SmlI	CTYRAG	2 cut(s)	314, 323
SmoI	CTYRAG	2 cut(s)	314, 323
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	6 cut(s)	9, 23, 45, 219, 224, 288
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	62, 144
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	384, 519, 906
StyI	CCWWGG	4 cut(s)	12, 250, 484, 601
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	5 cut(s)	272, 315, 342, 390, 903
TasI	AATT	1 cut(s)	347
TatI	WGTACW	2 cut(s)	491, 654
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	4 cut(s)	274, 876, 983, 1062
Tru1I	TTAA	2 cut(s)	510, 647
Tru9I	TTAA	2 cut(s)	510, 647
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	2 cut(s)	976, 1055
TspDTI	ATGAA	5 cut(s)	122, 375, 570, 904, 977
TspGWI	ACGGA	1 cut(s)	839
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	3 cut(s)	17, 319, 605
XceI	RCATGY	2 cut(s)	379, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	2 cut(s)	342, 390
XspI	CTAG	2 cut(s)	62, 144
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.