Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

80591043 .. 80592585

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG576000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGAAAGAAATAGATGCTAGTTGTGCTAATGACATCTCTCAAGGTGGATTGACTCAAGGGCAACAAACTCAGATCTCTCGAAATGAAAAAAGAACAGAACAGCTAAGTAAACGCCATACATCATTTGTCAAGGCTATATGGGTTGTGAAATTCGTTGTTAATGGTGAAGCAGCCAAGAAAAGGGATTCAAAGGTGCTTCCTGAAAATCCTGAAACTTCTGCTGCTGCCATCAAGAAGCAACATCCATTTAAACCAAAGGAAACCTGTCTGCCTGAAAATCCAGAAAGTGGCTCTATAAAGAAAGAGGAGAGTACAGATGTGACTGTTGCATCTAGCAAGAAGCCGGAGTCAGGTGAGGTTCTCACTGATGCAACTGAAGGAAAAAGTGTTGTGTATACTGTTGCAAAGCCCCAGTGGCTTGGAGCTATAACGTACAAGAGGATTGAGGAGGGTCATCAAGAGGCAGCATCTATGAATGAGCACGAGTCTGAAGTATTTGTGGACTATAAAGACAGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATCTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

199

Amino Acids

22.28

Weight (kDa)

6.92

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	399, 513
AfaI	GTAC	2 cut(s)	316, 437
AfiI	CCNNNNNNNGG	3 cut(s)	183, 290, 353
AgsI	TTSAA	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	563
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AloI	GAACNNNNNNTCC	1 cut(s)	577
AluBI	AGCT	2 cut(s)	106, 428
AluI	AGCT	2 cut(s)	106, 428
Alw21I	GWGCWC	1 cut(s)	486
ApeKI	GCWGC	5 cut(s)	173, 224, 227, 467, 558
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	179, 368
BauI	CACGAG	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	5 cut(s)	185, 211, 214, 479, 545
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	565
BfaI	CTAG	2 cut(s)	21, 336
BglI	GCCNNNNNGGC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	5 cut(s)	174, 225, 228, 468, 559
BlsI	GCNGC	5 cut(s)	175, 226, 229, 469, 560
Bme1390I	CCNGG	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	565
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	4 cut(s)	7, 341, 361, 479
BmuI	ACTGGG	1 cut(s)	409
BpuEI	CTTGAG	2 cut(s)	27, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 290, 353
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	3 cut(s)	183, 290, 353
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	323, 464
BseXI	GCAGC	5 cut(s)	185, 211, 214, 479, 545
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	183, 290, 353
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	75
BssNAI	GTATAC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	485
Bst1107I	GTATAC	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	328, 403
BstDEI	CTNAG	2 cut(s)	72, 107
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 418
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	563
BstV1I	GCAGC	5 cut(s)	185, 211, 214, 479, 545
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	366, 422
CciI	TCATGA	1 cut(s)	596
CfoI	GCGC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	315, 436
CviAII	CATG	2 cut(s)	547, 597
CviJI	RGCY	9 cut(s)	106, 137, 176, 294, 346, 412, 421, 428, 558
CviKI_1	RGCY	9 cut(s)	106, 137, 176, 294, 346, 412, 421, 428, 558
CviQI	GTAC	2 cut(s)	315, 436
DdeI	CTNAG	2 cut(s)	72, 107
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	399, 513
EcoRII	CCWGG	1 cut(s)	563
FaeI	CATG	2 cut(s)	550, 600
FatI	CATG	2 cut(s)	546, 596
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	174, 225, 228, 468, 559
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	174, 225, 228, 468, 559
FspBI	CTAG	2 cut(s)	21, 336
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	5 cut(s)	174, 225, 228, 468, 559
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	550, 600
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	55, 188, 350, 488, 551
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	179, 368
Hpy166II	GTNNAC	4 cut(s)	113, 399, 505, 544
Hpy188I	TCNGA	2 cut(s)	75, 493
Hpy188III	TCNNGA	7 cut(s)	81, 203, 212, 235, 284, 461, 597
Hpy8I	GTNNAC	4 cut(s)	113, 399, 505, 544
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	328, 403
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	332, 374, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 418
HpyF3I	CTNAG	2 cut(s)	72, 107
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	550, 600
HspAI	GCGC	1 cut(s)	561
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	5 cut(s)	185, 211, 214, 479, 545
LweI	GCATC	4 cut(s)	7, 341, 361, 479
MaeI	CTAG	2 cut(s)	21, 336
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	16, 532, 535
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	49, 359, 497
MnlI	CCTC	6 cut(s)	301, 352, 435, 442, 445, 457
MseI	TTAA	3 cut(s)	162, 252, 543
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	26, 418
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	550, 600
NmuCI	GTSAC	1 cut(s)	322
PagI	TCATGA	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	188, 551
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	175, 226, 229, 469, 560
PleI	GAGTC	3 cut(s)	49, 358, 496
PpsI	GAGTC	3 cut(s)	49, 358, 496
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	2 cut(s)	316, 437
RsaNI	GTAC	2 cut(s)	315, 436
SaqAI	TTAA	3 cut(s)	162, 252, 543
SatI	GCNGC	5 cut(s)	174, 225, 228, 468, 559
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	3 cut(s)	49, 359, 497
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	8 cut(s)	49, 108, 198, 269, 358, 363, 430, 437
SfaNI	GCATC	4 cut(s)	7, 341, 361, 479
SmlI	CTYRAG	2 cut(s)	42, 57
SmoI	CTYRAG	2 cut(s)	42, 57
Sse9I	AATT	1 cut(s)	152
SspMI	CTAG	2 cut(s)	21, 336
StyD4I	CCNGG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	328, 403
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	188, 551
Tru1I	TTAA	3 cut(s)	162, 252, 543
Tru9I	TTAA	3 cut(s)	162, 252, 543
TscAI	CASTG	2 cut(s)	373, 422
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	5 cut(s)	173, 224, 227, 467, 558
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	5 cut(s)	17, 102, 491, 552, 585
TspRI	CASTG	2 cut(s)	373, 422
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	2 cut(s)	21, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.