Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

15974270 .. 15976270

Gene Structure 2001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAACTGATACAGTTATGTCTGGACGAGTAAGGAAAGATCTATCAAAAACGAATCCAAATGGGAATATTCCTGAGAATCGTTCTAATTCACGTAAGAAGATCCAACGACGGAGTAAGAAAACCCTAATCTGTCCGGTTCAAAAACTATTCGATACTTGTAAGAAAGTTTTCGCTGATGGCAAATCTGGTACCGTCCCTTCTCAAGAAAACATTGAGATGCTTCGAGCCGTTTTGGATGAAATCAAGCCTGAGGATGTTGGCGTAAATCCTAAGATGTCGTATTTTCGATCTACAGTGACCGGACGATCTCCGTTAGTGACGTATCTTCACATCTATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCTCCATCTGGTGTTATCCCTCTTCACAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATCAAATCCTATGATTGGGTCCCTGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAAGTGAAAGTAGATTCGGACTTTACCGCACCTTGTGATACTTCTATACTGTACCCGGCTGATGGAGGGAATATGCATTGCTTCACCGCGAAAACGGCTTGCGCGGTTCTTGATGTTATTGGTCCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCTAGTTTCTCGGTCGATGGAGTCGTGGTTGCCGAGGAGGAGAAGGAAGGCTATGCATGGTTGAAGGAGAGGGAAGAGAAGCCAGAGGATTTAACGGTTACTGCATTGATGTATAGTGGACCAACCATCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

276

Amino Acids

30.82

Weight (kDa)

7.55

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	78 - 274	1.2e-77	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	664
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	2 cut(s)	602, 617
AciI	CCGC	4 cut(s)	540, 600, 617, 654
AclWI	GGATC	2 cut(s)	97, 644
AcyI	GRCGYC	1 cut(s)	661
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	193, 445, 566, 670
AfiI	CCNNNNNNNGG	3 cut(s)	383, 468, 575
AgsI	TTSAA	2 cut(s)	143, 757
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
AlwI	GGATC	2 cut(s)	97, 644
Asp700I	GAANNNNTTC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	472, 635, 812
AsuC2I	CCSGG	2 cut(s)	410, 569
AsuHPI	GGTGA	2 cut(s)	398, 589
AvaII	GGWCC	3 cut(s)	472, 635, 812
AxyI	CCTNAGG	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BccI	CCATC	5 cut(s)	173, 388, 569, 704, 827
BceAI	ACGGC	2 cut(s)	215, 624
BcnI	CCSGG	2 cut(s)	410, 569
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	294
BglII	AGATCT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	410, 569
Bme18I	GGWCC	3 cut(s)	472, 635, 812
BmgT120I	GGNCC	3 cut(s)	472, 635, 812
BmiI	GGNNCC	3 cut(s)	193, 473, 474
BmrFI	CCNGG	2 cut(s)	410, 569
BmsI	GCATC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	410, 569
BsaAI	YACGTR	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	726
BsaWI	WCCGGW	2 cut(s)	136, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 468, 575
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	2 cut(s)	244, 262
BseLI	CCNNNNNNNGG	3 cut(s)	383, 468, 575
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	2 cut(s)	66, 243
BseRI	GAGGAG	2 cut(s)	743, 746
BseYI	CCCAGC	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	602, 617
Bsh1285I	CGRYCG	1 cut(s)	708
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	708
BsiSI	CCGG	4 cut(s)	137, 303, 410, 569
BslFI	GGGAC	2 cut(s)	182, 458
BslI	CCNNNNNNNGG	3 cut(s)	383, 468, 575
BsmFI	GGGAC	2 cut(s)	182, 458
Bsp143I	GATC	5 cut(s)	40, 102, 290, 308, 649
BspACI	CCGC	4 cut(s)	540, 600, 617, 654
BspCNI	CTCAG	2 cut(s)	67, 244
BspFNI	CGCG	2 cut(s)	602, 617
BspLI	GGNNCC	3 cut(s)	193, 473, 474
BspPI	GGATC	2 cut(s)	97, 644
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	5 cut(s)	40, 102, 290, 308, 649
BssNI	GRCGYC	1 cut(s)	661
Bst4CI	ACNGT	6 cut(s)	16, 196, 298, 421, 564, 790
Bst6I	CTCTTC	2 cut(s)	402, 762
BstACI	GRCGYC	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	3 cut(s)	75, 252, 273
BstF5I	GGATG	2 cut(s)	244, 262
BstFNI	CGCG	2 cut(s)	602, 617
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	5 cut(s)	43, 105, 293, 311, 652
BstMBI	GATC	5 cut(s)	40, 102, 290, 308, 649
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	408, 567
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	2 cut(s)	602, 617
BstX2I	RGATCY	2 cut(s)	40, 102
BstYI	RGATCY	2 cut(s)	40, 102
Bsu36I	CCTNAGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	244, 262
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	472, 635, 812
Csp6I	GTAC	4 cut(s)	192, 444, 565, 669
CviAII	CATG	2 cut(s)	342, 750
CviJI	RGCY	8 cut(s)	230, 250, 433, 490, 572, 611, 744, 775
CviKI_1	RGCY	8 cut(s)	230, 250, 433, 490, 572, 611, 744, 775
CviQI	GTAC	4 cut(s)	192, 444, 565, 669
DdeI	CTNAG	3 cut(s)	75, 252, 273
DpnI	GATC	5 cut(s)	42, 104, 292, 310, 651
DpnII	GATC	5 cut(s)	40, 102, 290, 308, 649
DraIII	CACNNNGTG	1 cut(s)	548
Eam1104I	CTCTTC	2 cut(s)	402, 762
EarI	CTCTTC	2 cut(s)	402, 762
Eco47I	GGWCC	3 cut(s)	472, 635, 812
Eco81I	CCTNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	472
EcoT22I	ATGCAT	4 cut(s)	343, 453, 591, 751
FaeI	CATG	2 cut(s)	345, 753
FaqI	GGGAC	2 cut(s)	182, 458
FatI	CATG	2 cut(s)	341, 749
FauI	CCCGC	1 cut(s)	661
FokI	GGATG	2 cut(s)	251, 269
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	616
GsaI	CCCAGC	1 cut(s)	490
HapII	CCGG	4 cut(s)	137, 303, 410, 569
HhaI	GCGC	1 cut(s)	617
Hin1I	GRCGYC	1 cut(s)	661
Hin1II	CATG	2 cut(s)	345, 753
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HinfI	GANTC	6 cut(s)	55, 79, 351, 479, 527, 714
HpaII	CCGG	4 cut(s)	137, 303, 410, 569
HphI	GGTGA	2 cut(s)	398, 589
Hpy166II	GTNNAC	2 cut(s)	374, 812
Hpy188I	TCNGA	3 cut(s)	499, 532, 649
Hpy188III	TCNNGA	5 cut(s)	24, 74, 206, 355, 623
Hpy8I	GTNNAC	2 cut(s)	374, 812
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	4 cut(s)	210, 730, 734, 751
HpyCH4III	ACNGT	6 cut(s)	16, 196, 298, 421, 564, 790
HpyCH4IV	ACGT	3 cut(s)	94, 323, 661
HpyCH4V	TGCA	6 cut(s)	341, 363, 451, 589, 749, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	3 cut(s)	75, 252, 273
HpySE526I	ACGT	3 cut(s)	94, 323, 661
Hsp92I	GRCGYC	1 cut(s)	661
Hsp92II	CATG	2 cut(s)	345, 753
HspAI	GCGC	1 cut(s)	615
KflI	GGGWCCC	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	40, 102, 290, 308, 649
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	3 cut(s)	94, 323, 661
MaeIII	GTNAC	3 cut(s)	298, 319, 790
MalI	GATC	5 cut(s)	42, 104, 292, 310, 651
MboI	GATC	5 cut(s)	40, 102, 290, 308, 649
MboII	GAAGA	4 cut(s)	112, 320, 389, 779
MflI	RGATCY	2 cut(s)	40, 102
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	247, 387, 405, 572, 648, 721, 724, 756, 772
Mph1103I	ATGCAT	4 cut(s)	343, 453, 591, 751
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	785
MslI	CAYNNNNRTG	2 cut(s)	218, 336
MspI	CCGG	4 cut(s)	137, 303, 410, 569
MspR9I	CCNGG	2 cut(s)	410, 569
MvnI	CGCG	2 cut(s)	602, 617
MwoI	GCNNNNNNNGC	1 cut(s)	608
NciI	CCSGG	2 cut(s)	410, 569
NdeII	GATC	5 cut(s)	40, 102, 290, 308, 649
NlaIII	CATG	2 cut(s)	345, 753
NlaIV	GGNNCC	3 cut(s)	193, 473, 474
NmeAIII	GCCGAG	2 cut(s)	516, 751
NmuCI	GTSAC	2 cut(s)	298, 319
NsiI	ATGCAT	4 cut(s)	343, 453, 591, 751
NspI	RCATGY	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	714, 723
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	5 cut(s)	55, 79, 351, 479, 527
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	3 cut(s)	193, 473, 474
PspPI	GGNCC	3 cut(s)	472, 635, 812
PspPPI	RGGWCCY	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	40, 102
RsaI	GTAC	4 cut(s)	193, 445, 566, 670
RsaNI	GTAC	4 cut(s)	192, 444, 565, 669
RseI	CAYNNNNRTG	2 cut(s)	218, 336
SaqAI	TTAA	1 cut(s)	785
Sau3AI	GATC	5 cut(s)	40, 102, 290, 308, 649
Sau96I	GGNCC	3 cut(s)	472, 635, 812
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	410, 569
SetI	ASST	6 cut(s)	97, 326, 379, 435, 547, 664
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	3 cut(s)	472, 635, 812
SmiMI	CAYNNNNRTG	2 cut(s)	218, 336
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	4 cut(s)	540, 600, 617, 654
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	408, 567
TaaI	ACNGT	6 cut(s)	16, 196, 298, 421, 564, 790
TaiI	ACGT	3 cut(s)	97, 326, 664
TaqI	TCGA	6 cut(s)	153, 226, 289, 356, 681, 708
TaqII	GACCGA	1 cut(s)	694
TasI	AATT	1 cut(s)	88
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	5 cut(s)	55, 79, 351, 479, 527
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	2 cut(s)	298, 319
Tsp45I	GTSAC	2 cut(s)	298, 319
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	3 cut(s)	127, 303, 678
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	3 cut(s)	472, 635, 812
XceI	RCATGY	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	696
ZraI	GACGTC	1 cut(s)	662
Zsp2I	ATGCAT	4 cut(s)	343, 453, 591, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.