Rw3G028740

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002785
Physical Location & Seq
Reverse (-)
43302692 .. 43304991
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028740.1

Sequence Viewer

Length: 858 bp
ATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGGGTAGCGATCGTCATCACAACAAGGTTAATGTTGTTGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAGAAAGTATTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTTTGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCACCATGTGCAGGAATTGTGCAACGTTCTTGATAAATTTAGGCCTGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTCAAAGGCACTCCAAGGGTTACATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGGAATGACTGTTTTCAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTATCAAGAATTCAGATGCTTCTCAAGTGAGATTGGCAAAGTTGAAAGCTGATAGCGTATTCACTGCCCCTTGCAAAACATCAGTACTATATCCAACAACAGGTGGCAACATCCACGCCTTCACCGCCATAACTCCTTGTGCGGTGCTTGATGTGATCGGGCCTCCCTATTCTAAAGAAGATGGCCGGGACTGCTCATATTACAAAGATCATCCCTATGCTTCCTATTCAGATGCAAAAGTAACTGAAGAGGAAGGTGATCATTATGGTTGGTTGGAAGAGATTGAGATGCCTGATAACTCAGAAATGGACGGAATCGAGTACGGGGGTCCGCAGATTATTGACACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

285

Amino Acids

31.79

Weight (kDa)

6.91

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 86 - 281 1e-72 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AciI CCGC 3 cut(s) 630, 647, 836
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 2 cut(s) 266, 514
AcuI CTGAAG 2 cut(s) 297, 771
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 591, 827
AfiI CCNNNNNNNGG 3 cut(s) 241, 410, 605
AgsI TTSAA 3 cut(s) 205, 313, 550
AluBI AGCT 2 cut(s) 460, 554
AluI AGCT 2 cut(s) 460, 554
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 4 cut(s) 208, 272, 665, 688
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 266, 514
AspS9I GGNCC 2 cut(s) 665, 833
AsuC2I CCSGG 2 cut(s) 438, 692
AsuHPI GGTGA 3 cut(s) 224, 619, 773
AvaII GGWCC 1 cut(s) 833
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 441, 680
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 2 cut(s) 438, 692
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 856
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 591
Bme1390I CCNGG 2 cut(s) 438, 692
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 2 cut(s) 665, 833
BmiI GGNNCC 1 cut(s) 834
BmrFI CCNGG 2 cut(s) 438, 692
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 5 cut(s) 82, 465, 511, 727, 783
BmuI ACTGGG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 438, 692
BsaBI GATNNNNATC 2 cut(s) 45, 479
BsaJI CCNNGG 2 cut(s) 211, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 410, 605
Bse1I ACTGG 2 cut(s) 415, 471
Bse8I GATNNNNATC 2 cut(s) 45, 479
BseDI CCNNGG 2 cut(s) 211, 341
BseGI GGATG 3 cut(s) 433, 615, 715
BseJI GATNNNNATC 2 cut(s) 45, 479
BseLI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BseMII CTCAG 2 cut(s) 315, 819
BseNI ACTGG 2 cut(s) 415, 471
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 210, 274, 667, 690
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 438, 691
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 4 cut(s) 210, 274, 667, 690
Bsp143I GATC 5 cut(s) 40, 502, 660, 712, 763
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 3 cut(s) 630, 647, 836
BspANI GGCC 4 cut(s) 210, 274, 667, 690
BspCNI CTCAG 2 cut(s) 316, 818
BspLI GGNNCC 1 cut(s) 834
BspPI GGATC 1 cut(s) 497
BsrI ACTGG 2 cut(s) 415, 471
BssECI CCNNGG 2 cut(s) 211, 341
BssMI GATC 5 cut(s) 40, 502, 660, 712, 763
BssT1I CCWWGG 2 cut(s) 211, 341
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 2 cut(s) 747, 777
BstDEI CTNAG 3 cut(s) 290, 324, 805
BstF5I GGATG 3 cut(s) 433, 615, 715
BstKTI GATC 5 cut(s) 43, 505, 663, 715, 766
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 5 cut(s) 40, 502, 660, 712, 763
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 629, 696
BstSCI CCNGG 2 cut(s) 436, 690
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 4 cut(s) 210, 274, 667, 690
BtsCI GGATG 3 cut(s) 433, 615, 715
BtsI GCAGTG 2 cut(s) 301, 567
BtsIMutI CAGTG 2 cut(s) 301, 567
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 665, 833
Csp6I GTAC 2 cut(s) 590, 826
CviAII CATG 2 cut(s) 80, 236
CviJI RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviKI_1 RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviQI GTAC 2 cut(s) 590, 826
DdeI CTNAG 3 cut(s) 290, 324, 805
DpnI GATC 5 cut(s) 42, 504, 662, 714, 765
DpnII GATC 5 cut(s) 40, 502, 660, 712, 763
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 2 cut(s) 747, 777
EarI CTCTTC 2 cut(s) 747, 777
Eco130I CCWWGG 2 cut(s) 211, 341
Eco147I AGGCCT 2 cut(s) 210, 274
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 2 cut(s) 297, 771
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 211, 341
ErhI CCWWGG 2 cut(s) 211, 341
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 83, 239
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 79, 235
FauNDI CATATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 3 cut(s) 420, 602, 702
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 856
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 4 cut(s) 210, 274, 667, 690
HapII CCGG 2 cut(s) 438, 691
Hin1II CATG 2 cut(s) 83, 239
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 161, 177, 819
HpaII CCGG 2 cut(s) 438, 691
HphI GGTGA 3 cut(s) 224, 619, 773
Hpy188I TCNGA 4 cut(s) 160, 520, 736, 808
Hpy188III TCNNGA 2 cut(s) 260, 511
HpyAV CCTTC 4 cut(s) 133, 234, 634, 752
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 198, 255
HpyCH4V TGCA 9 cut(s) 126, 172, 241, 252, 304, 372, 478, 579, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 696
HpyF3I CTNAG 3 cut(s) 290, 324, 805
HpySE526I ACGT 2 cut(s) 198, 255
Hsp92II CATG 2 cut(s) 83, 239
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 5 cut(s) 40, 502, 660, 712, 763
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 5 cut(s) 82, 465, 511, 727, 783
MaeI CTAG 1 cut(s) 856
MaeII ACGT 2 cut(s) 198, 255
MaeIII GTNAC 2 cut(s) 346, 745
MalI GATC 5 cut(s) 42, 504, 662, 714, 765
MboI GATC 5 cut(s) 40, 502, 660, 712, 763
MboII GAAGA 7 cut(s) 144, 147, 290, 301, 695, 764, 794
MluCI AATT 3 cut(s) 245, 266, 514
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 623, 759
MnlI CCTC 7 cut(s) 4, 102, 240, 319, 432, 678, 748
MseI TTAA 2 cut(s) 60, 144
MslI CAYNNNNRTG 2 cut(s) 78, 720
MspI CCGG 2 cut(s) 438, 691
MspR9I CCNGG 2 cut(s) 438, 692
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 629, 696
NciI CCSGG 2 cut(s) 438, 692
NdeI CATATG 1 cut(s) 490
NdeII GATC 5 cut(s) 40, 502, 660, 712, 763
NlaIII CATG 2 cut(s) 83, 239
NlaIV GGNNCC 1 cut(s) 834
PceI AGGCCT 2 cut(s) 210, 274
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 161, 819
PflMI CCANNNNNTGG 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 1 cut(s) 128
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 2 cut(s) 665, 833
PstNI CAGNNNCTG 1 cut(s) 410
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 2 cut(s) 591, 827
RsaNI GTAC 2 cut(s) 590, 826
RseI CAYNNNNRTG 2 cut(s) 78, 720
SaqAI TTAA 2 cut(s) 60, 144
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 5 cut(s) 40, 502, 660, 712, 763
Sau96I GGNCC 2 cut(s) 665, 833
ScaI AGTACT 1 cut(s) 591
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 438, 692
SfaNI GCATC 5 cut(s) 82, 465, 511, 727, 783
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 78, 720
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 3 cut(s) 245, 266, 514
SseBI AGGCCT 2 cut(s) 210, 274
SsiI CCGC 3 cut(s) 630, 647, 836
SspMI CTAG 1 cut(s) 856
StuI AGGCCT 2 cut(s) 210, 274
StyD4I CCNGG 2 cut(s) 436, 690
StyI CCWWGG 2 cut(s) 211, 341
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 201, 258
TaqI TCGA 1 cut(s) 822
TasI AATT 3 cut(s) 245, 266, 514
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 2 cut(s) 161, 819
Tru1I TTAA 2 cut(s) 60, 144
Tru9I TTAA 2 cut(s) 60, 144
TscAI CASTG 2 cut(s) 301, 574
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 2 cut(s) 301, 574
Van91I CCANNNNNTGG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 2 cut(s) 266, 514
XspI CTAG 1 cut(s) 856
ZrmI AGTACT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.