Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

36900309 .. 36903624

Gene Structure 3316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGATTGAGACGACGTTGCCTCATCGAAGAGAGAATAAGGCGCTTCATCCCTCGCCGGAGGAGACGAATTCGATTAGCAAGCCCAGGAAGTCCCGGCGACGTCATCGCAAGATGTCGCCGGTGCAGAAGCTTTACGAGACGTGCAAGGTTGTGTTCTCCTATTGCGGCGCCGGGATTGTTCCATCCTCCGAAGATATCCAGAAGCTATGCTCTGTTGTGGATGCTATGAGACCTGTCGATGTTGGCCTGACACCTGAGCTGCCATACTTTCGACTCACAACAGCTTGGCGAACCCCGCTAATCACATACTTGCATCTGTTTGAGGGTGACAAATTTTCAATGGGGATATTCTGTTTGCCGCCTTCAGGTGTAATTCCATTGCATAATCACCCAGGCATGACGGTTTTCAGTAAGCTTCTTTTCGGGACAATGCACATCAAGTCTTATGACTGGGTGGTTGATGCCCCTGAGAAAACATCAACAACTGAGAATCAACAACTGACAATTGAGAATCAGCAACCGGCAACTGAGAATCAGAACCCGGCAATTGAGAATCAGCAGCCTACAGCAGATAATTCGATTCCTCCCCAAGTTAATGCGGTTGCACCTCCTGGTACCCGCTTGGCAAAAATGAAGGTTGATGCTGACTTTACTGCTCCTTGTGACACTTCAATCCTCTATCCAGCTGATGGAGGCAACCTGCATTGCTTCACTGCAGTGACAGCATGTGCGGTGCTTGATGTGCTCGGTCCCCCTTATTCTGATCCCGATGGTCGCCACTGCCAATACTACCTTGATTTCCCATTTTCTCAGTTCACAGTTGATGGAGTATCAATCCCAGAAGAGGAGAAGGAAGGTTACGCATGGCTTCAAGAGATTGAGAAACCAGACGACCTAGCTTTTGTTGGAGCGCTGTACAGCGGCCCGAAAATACAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

316

Amino Acids

35.04

Weight (kDa)

5.5

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	73 - 312	2.4e-72	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	711
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	2 cut(s)	170, 617
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	7 cut(s)	168, 299, 362, 602, 622, 734, 924
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	70, 335
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	2 cut(s)	103, 171
AfaI	GTAC	2 cut(s)	619, 920
AfeI	AGCGCT	1 cut(s)	915
AfiI	CCNNNNNNNGG	3 cut(s)	368, 692, 847
AgsI	TTSAA	3 cut(s)	342, 675, 875
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	3 cut(s)	86, 394, 613
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	7 cut(s)	133, 208, 262, 287, 418, 689, 902
AluI	AGCT	7 cut(s)	133, 208, 262, 287, 418, 689, 902
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	4 cut(s)	5, 59, 134, 226
AlwI	GGATC	1 cut(s)	761
Aor51HI	AGCGCT	1 cut(s)	915
AoxI	GGCC	2 cut(s)	247, 925
ApeKI	GCWGC	2 cut(s)	262, 562
ApoI	RAATTY	2 cut(s)	70, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	3 cut(s)	46, 173, 916
AspS9I	GGNCC	2 cut(s)	752, 926
AsuC2I	CCSGG	3 cut(s)	97, 175, 545
AsuHPI	GGTGA	2 cut(s)	341, 383
AvaII	GGWCC	1 cut(s)	752
BanI	GGYRCC	2 cut(s)	170, 617
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	249, 574
BccI	CCATC	4 cut(s)	193, 686, 767, 821
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BciT130I	CCWGG	3 cut(s)	88, 396, 615
BcnI	CCSGG	3 cut(s)	97, 175, 545
BcoDI	GTCTC	4 cut(s)	5, 59, 134, 226
BfaI	CTAG	1 cut(s)	899
BfmI	CTRYAG	2 cut(s)	567, 717
BfoI	RGCGCY	3 cut(s)	47, 174, 917
BfuAI	ACCTGC	1 cut(s)	711
BisI	GCNGC	5 cut(s)	169, 263, 362, 563, 925
BlsI	GCNGC	5 cut(s)	170, 264, 363, 564, 926
Bme1390I	CCNGG	6 cut(s)	88, 97, 175, 396, 545, 615
Bme18I	GGWCC	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	752, 926
BmiI	GGNNCC	3 cut(s)	172, 619, 754
BmrFI	CCNGG	6 cut(s)	88, 97, 175, 396, 545, 615
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	4 cut(s)	214, 325, 454, 634
BmuI	ACTGGG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	3 cut(s)	97, 175, 545
BsaHI	GRCGYC	2 cut(s)	103, 171
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	86, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 692, 847
Bse118I	RCCGGY	2 cut(s)	121, 523
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	2 cut(s)	380, 706
BseBI	CCWGG	3 cut(s)	88, 396, 615
BseDI	CCNNGG	2 cut(s)	86, 394
BseGI	GGATG	3 cut(s)	49, 185, 229
BseLI	CCNNNNNNNGG	3 cut(s)	368, 692, 847
BseMI	GCAATG	2 cut(s)	380, 706
BseMII	CTCAG	5 cut(s)	249, 462, 480, 522, 827
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	77, 863
BseXI	GCAGC	2 cut(s)	249, 574
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	249, 927
BshNI	GGYRCC	2 cut(s)	170, 617
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	6 cut(s)	59, 97, 122, 174, 524, 545
BslFI	GGGAC	3 cut(s)	79, 442, 738
BslI	CCNNNNNNNGG	3 cut(s)	368, 692, 847
BsmAI	GTCTC	4 cut(s)	5, 59, 134, 226
BsmBI	CGTCTC	3 cut(s)	5, 59, 134
BsmFI	GGGAC	3 cut(s)	79, 442, 738
BsnI	GGCC	2 cut(s)	249, 927
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	1 cut(s)	766
BspACI	CCGC	7 cut(s)	168, 299, 362, 602, 622, 734, 924
BspANI	GGCC	2 cut(s)	249, 927
BspCNI	CTCAG	5 cut(s)	250, 463, 481, 523, 826
BspLI	GGNNCC	3 cut(s)	172, 619, 754
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	1 cut(s)	761
BspT107I	GGYRCC	2 cut(s)	170, 617
BspTNI	GGTCTC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	380, 706
BsrFI	RCCGGY	2 cut(s)	121, 523
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	2 cut(s)	121, 523
BssECI	CCNNGG	2 cut(s)	86, 394
BssMI	GATC	1 cut(s)	766
BssNI	GRCGYC	2 cut(s)	103, 171
Bst2UI	CCWGG	3 cut(s)	88, 396, 615
Bst4CI	ACNGT	2 cut(s)	406, 823
Bst6I	CTCTTC	2 cut(s)	25, 840
BstACI	GRCGYC	2 cut(s)	103, 171
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	5 cut(s)	258, 471, 489, 531, 813
BstF5I	GGATG	3 cut(s)	49, 185, 229
BstH2I	RGCGCY	3 cut(s)	47, 174, 917
BstHHI	GCGC	3 cut(s)	46, 173, 916
BstKTI	GATC	1 cut(s)	769
BstMAI	GTCTC	4 cut(s)	5, 59, 134, 226
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 725, 745
BstNI	CCWGG	3 cut(s)	88, 396, 615
BstNSI	RCATGY	1 cut(s)	732
BstSCI	CCNGG	6 cut(s)	86, 95, 173, 394, 543, 613
BstSFI	CTRYAG	2 cut(s)	567, 717
BstV1I	GCAGC	2 cut(s)	249, 574
BsuRI	GGCC	2 cut(s)	249, 927
BtgZI	GCGATG	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	49, 185, 229
BtsI	GCAGTG	3 cut(s)	714, 726, 781
BtsIMutI	CAGTG	3 cut(s)	714, 726, 781
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	3 cut(s)	46, 173, 916
Cfr10I	RCCGGY	2 cut(s)	121, 523
Cfr13I	GGNCC	2 cut(s)	752, 926
Csp6I	GTAC	2 cut(s)	618, 919
CviAII	CATG	3 cut(s)	400, 729, 867
CviQI	GTAC	2 cut(s)	618, 919
DdeI	CTNAG	5 cut(s)	258, 471, 489, 531, 813
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	25, 840
EarI	CTCTTC	2 cut(s)	25, 840
Eco31I	GGTCTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	752
Eco47III	AGCGCT	1 cut(s)	915
Eco57I	CTGAAG	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	86, 394, 613
EcoRV	GATATC	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
Esp3I	CGTCTC	3 cut(s)	5, 59, 134
FaeI	CATG	3 cut(s)	403, 732, 870
FaiI	YATR	9 cut(s)	211, 230, 268, 310, 387, 401, 450, 730, 868
FaqI	GGGAC	3 cut(s)	79, 442, 738
FatI	CATG	3 cut(s)	399, 728, 866
FauI	CCCGC	2 cut(s)	306, 629
Fnu4HI	GCNGC	5 cut(s)	169, 263, 362, 563, 925
FokI	GGATG	3 cut(s)	36, 172, 236
Fsp4HI	GCNGC	5 cut(s)	169, 263, 362, 563, 925
FspBI	CTAG	1 cut(s)	899
GlaI	GCGC	3 cut(s)	45, 172, 915
GluI	GCNGC	5 cut(s)	169, 263, 362, 563, 925
HaeII	RGCGCY	3 cut(s)	47, 174, 917
HaeIII	GGCC	2 cut(s)	249, 927
HapII	CCGG	6 cut(s)	59, 97, 122, 174, 524, 545
HhaI	GCGC	3 cut(s)	46, 173, 916
Hin1I	GRCGYC	2 cut(s)	103, 171
Hin1II	CATG	3 cut(s)	403, 732, 870
Hin6I	GCGC	3 cut(s)	44, 171, 914
HinP1I	GCGC	3 cut(s)	44, 171, 914
HindIII	AAGCTT	2 cut(s)	131, 416
HinfI	GANTC	6 cut(s)	276, 493, 514, 535, 556, 583
HpaII	CCGG	6 cut(s)	59, 97, 122, 174, 524, 545
HphI	GGTGA	2 cut(s)	341, 383
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	3 cut(s)	193, 540, 766
Hpy188III	TCNNGA	4 cut(s)	202, 427, 770, 875
Hpy8I	GTNNAC	1 cut(s)	819
Hpy99I	CGWCG	2 cut(s)	19, 105
HpyAV	CCTTC	4 cut(s)	375, 631, 847, 851
HpyCH4III	ACNGT	2 cut(s)	406, 823
HpyCH4IV	ACGT	3 cut(s)	17, 103, 143
HpyCH4V	TGCA	8 cut(s)	127, 147, 316, 385, 436, 608, 706, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 725, 745
HpyF3I	CTNAG	5 cut(s)	258, 471, 489, 531, 813
HpySE526I	ACGT	3 cut(s)	17, 103, 143
Hsp92I	GRCGYC	2 cut(s)	103, 171
Hsp92II	CATG	3 cut(s)	403, 732, 870
HspAI	GCGC	3 cut(s)	44, 171, 914
KasI	GGCGCC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	1 cut(s)	766
LmnI	GCTCC	2 cut(s)	664, 911
Lsp1109I	GCAGC	2 cut(s)	249, 574
LweI	GCATC	4 cut(s)	214, 325, 454, 634
MaeI	CTAG	1 cut(s)	899
MaeII	ACGT	3 cut(s)	17, 103, 143
MaeIII	GTNAC	4 cut(s)	329, 665, 721, 860
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MboII	GAAGA	3 cut(s)	42, 206, 857
MfeI	CAATTG	2 cut(s)	507, 549
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	6 cut(s)	70, 335, 375, 507, 549, 577
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	889
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	719
MspA1I	CMGCKG	2 cut(s)	689, 924
MspI	CCGG	6 cut(s)	59, 97, 122, 174, 524, 545
MspR9I	CCNGG	6 cut(s)	88, 97, 175, 396, 545, 615
MunI	CAATTG	2 cut(s)	507, 549
MvaI	CCWGG	3 cut(s)	88, 396, 615
MwoI	GCNNNNNNNGC	3 cut(s)	298, 725, 745
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	3 cut(s)	97, 175, 545
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	3 cut(s)	403, 732, 870
NlaIV	GGNNCC	3 cut(s)	172, 619, 754
NmuCI	GTSAC	3 cut(s)	329, 665, 721
NspI	RCATGY	1 cut(s)	732
OliI	CACNNNNGTG	1 cut(s)	719
PfeI	GAWTC	5 cut(s)	493, 514, 535, 556, 583
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	170, 264, 363, 564, 926
PleI	GAGTC	1 cut(s)	270
PluTI	GGCGCC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	86, 394, 613
PspGI	CCWGG	3 cut(s)	86, 394, 613
PspN4I	GGNNCC	3 cut(s)	172, 619, 754
PspPI	GGNCC	2 cut(s)	752, 926
PstI	CTGCAG	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	619, 920
RsaNI	GTAC	2 cut(s)	618, 919
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	5 cut(s)	169, 263, 362, 563, 925
Sau3AI	GATC	1 cut(s)	766
Sau96I	GGNCC	2 cut(s)	752, 926
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	6 cut(s)	88, 97, 175, 396, 545, 615
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	4 cut(s)	214, 325, 454, 634
SfcI	CTRYAG	2 cut(s)	567, 717
SfoI	GGCGCC	1 cut(s)	172
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	70, 335, 375, 507, 549, 577
SsiI	CCGC	7 cut(s)	168, 299, 362, 602, 622, 734, 924
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	899
StyD4I	CCNGG	6 cut(s)	86, 95, 173, 394, 543, 613
TaaI	ACNGT	2 cut(s)	406, 823
TaiI	ACGT	3 cut(s)	20, 106, 146
TaqI	TCGA	5 cut(s)	28, 74, 240, 274, 581
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	6 cut(s)	70, 335, 375, 507, 549, 577
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	3 cut(s)	171, 364, 927
TfiI	GAWTC	5 cut(s)	493, 514, 535, 556, 583
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	721, 726, 788
TseFI	GTSAC	3 cut(s)	329, 665, 721
TseI	GCWGC	2 cut(s)	262, 562
Tsp45I	GTSAC	3 cut(s)	329, 665, 721
TspDTI	ATGAA	2 cut(s)	38, 650
TspRI	CASTG	3 cut(s)	721, 726, 788
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	2 cut(s)	70, 335
XceI	RCATGY	1 cut(s)	732
XspI	CTAG	1 cut(s)	899
ZraI	GACGTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.