RchiOBHm_Chr3g0496281

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002785
Physical Location & Seq
Reverse (-)
47017640 .. 47021163
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45862

Sequence Viewer

Length: 858 bp
ATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGGGTGGCGATCGTCATCACAACAAGGTTAATGTTGTTGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAGAAAGTATTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTTTGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCACCGTGTGCAGGAATTGTGCAACGTTCTTGATAAATTTAGGCCTGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTGAAAGGCACTCCAAGGGTTACATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGGAATGACTGTTTTCAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTATCAAGAATTCAGATGCTTCTCAAGTGAGATTGGCAAAGTTGAAAGCTGATAGCGTATTCACTGCCCCTTGCAAAACATCAGTACTATATCCAACAACAGGTGGCAATATCCACGCCTTCACCGCCATAACTCCTTGTGCGGTGCTTGATGTGATCGGGCCCCCCTATTCTAAAGAAGATGGCCGGGACTGCTCATATTACAAAGATCATCCCTATGCTTCGTATTCTGCTGCAAAAGTAACTGAAGAGGAAGGTGATAATTATGGGTGGTTGGAAGAGATTGAGATGCCTGATAACTCAGAAATGGATGGAATCGAGTACGGGGGTCCGCAGATTATTGACACCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

285

Amino Acids

31.71

Weight (kDa)

7.6

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 86 - 281 7.4e-73 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AciI CCGC 3 cut(s) 630, 647, 836
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 2 cut(s) 266, 514
AcuI CTGAAG 2 cut(s) 297, 771
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 591, 827
AfiI CCNNNNNNNGG 3 cut(s) 241, 410, 605
AgsI TTSAA 3 cut(s) 205, 313, 550
AluBI AGCT 2 cut(s) 460, 554
AluI AGCT 2 cut(s) 460, 554
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 4 cut(s) 208, 272, 665, 688
ApaI GGGCCC 1 cut(s) 669
ApeKI GCWGC 2 cut(s) 126, 737
ApoI RAATTY 2 cut(s) 266, 514
AspS9I GGNCC 3 cut(s) 665, 666, 833
AsuC2I CCSGG 2 cut(s) 438, 692
AsuHPI GGTGA 4 cut(s) 224, 340, 619, 773
AvaII GGWCC 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 138, 724
BccI CCATC 3 cut(s) 441, 680, 809
BcnI CCSGG 2 cut(s) 438, 692
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 856
BisI GCNGC 2 cut(s) 127, 738
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 2 cut(s) 128, 739
BmcAI AGTACT 1 cut(s) 591
Bme1390I CCNGG 2 cut(s) 438, 692
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 3 cut(s) 665, 666, 833
BmiI GGNNCC 3 cut(s) 667, 668, 834
BmrFI CCNGG 2 cut(s) 438, 692
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 4 cut(s) 82, 465, 511, 783
BmuI ACTGGG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 438, 692
BsaBI GATNNNNATC 2 cut(s) 45, 479
BsaJI CCNNGG 2 cut(s) 211, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 410, 605
Bse1I ACTGG 2 cut(s) 415, 471
Bse8I GATNNNNATC 2 cut(s) 45, 479
BseDI CCNNGG 2 cut(s) 211, 341
BseGI GGATG 3 cut(s) 433, 715, 820
BseJI GATNNNNATC 2 cut(s) 45, 479
BseLI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BseMII CTCAG 2 cut(s) 315, 819
BseNI ACTGG 2 cut(s) 415, 471
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 2 cut(s) 138, 724
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 210, 274, 667, 690
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 438, 691
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 4 cut(s) 210, 274, 667, 690
Bsp120I GGGCCC 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 40, 502, 660, 712
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 3 cut(s) 630, 647, 836
BspANI GGCC 4 cut(s) 210, 274, 667, 690
BspCNI CTCAG 2 cut(s) 316, 818
BspLI GGNNCC 3 cut(s) 667, 668, 834
BspPI GGATC 1 cut(s) 497
BsrI ACTGG 2 cut(s) 415, 471
BssECI CCNNGG 2 cut(s) 211, 341
BssMI GATC 4 cut(s) 40, 502, 660, 712
BssT1I CCWWGG 2 cut(s) 211, 341
Bst4CI ACNGT 2 cut(s) 236, 448
Bst6I CTCTTC 2 cut(s) 747, 777
BstDEI CTNAG 3 cut(s) 290, 324, 805
BstF5I GGATG 3 cut(s) 433, 715, 820
BstKTI GATC 4 cut(s) 43, 505, 663, 715
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 40, 502, 660, 712
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 629, 696
BstSCI CCNGG 2 cut(s) 436, 690
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 138, 724
BsuRI GGCC 4 cut(s) 210, 274, 667, 690
BtsCI GGATG 3 cut(s) 433, 715, 820
BtsI GCAGTG 2 cut(s) 301, 567
BtsIMutI CAGTG 2 cut(s) 301, 567
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 665, 666, 833
Csp6I GTAC 2 cut(s) 590, 826
CviAII CATG 1 cut(s) 80
CviJI RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviKI_1 RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviQI GTAC 2 cut(s) 590, 826
DdeI CTNAG 3 cut(s) 290, 324, 805
DpnI GATC 4 cut(s) 42, 504, 662, 714
DpnII GATC 4 cut(s) 40, 502, 660, 712
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 2 cut(s) 747, 777
EarI CTCTTC 2 cut(s) 747, 777
Eco130I CCWWGG 2 cut(s) 211, 341
Eco147I AGGCCT 2 cut(s) 210, 274
Eco24I GRGCYC 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 2 cut(s) 297, 771
EcoO109I RGGNCCY 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 211, 341
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 211, 341
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 83
FaqI GGGAC 1 cut(s) 707
FatI CATG 1 cut(s) 79
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 127, 738
FokI GGATG 3 cut(s) 420, 702, 827
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 127, 738
FspBI CTAG 1 cut(s) 856
GluI GCNGC 2 cut(s) 127, 738
HaeIII GGCC 4 cut(s) 210, 274, 667, 690
HapII CCGG 2 cut(s) 438, 691
Hin1II CATG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 161, 177, 819
HpaII CCGG 2 cut(s) 438, 691
HphI GGTGA 4 cut(s) 224, 340, 619, 773
Hpy188I TCNGA 3 cut(s) 160, 520, 808
Hpy188III TCNNGA 2 cut(s) 260, 511
HpyAV CCTTC 4 cut(s) 133, 234, 634, 752
HpyCH4III ACNGT 2 cut(s) 236, 448
HpyCH4IV ACGT 2 cut(s) 198, 255
HpyCH4V TGCA 9 cut(s) 126, 172, 241, 252, 304, 372, 478, 579, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 696
HpyF3I CTNAG 3 cut(s) 290, 324, 805
HpySE526I ACGT 2 cut(s) 198, 255
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 4 cut(s) 40, 502, 660, 712
Lsp1109I GCAGC 2 cut(s) 138, 724
LweI GCATC 4 cut(s) 82, 465, 511, 783
MaeI CTAG 1 cut(s) 856
MaeII ACGT 2 cut(s) 198, 255
MaeIII GTNAC 2 cut(s) 346, 745
MalI GATC 4 cut(s) 42, 504, 662, 714
MboI GATC 4 cut(s) 40, 502, 660, 712
MboII GAAGA 7 cut(s) 144, 147, 290, 301, 695, 764, 794
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 4 cut(s) 245, 266, 514, 766
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 623, 759
MnlI CCTC 6 cut(s) 4, 102, 240, 319, 432, 748
MseI TTAA 2 cut(s) 60, 144
MslI CAYNNNNRTG 2 cut(s) 78, 720
MspI CCGG 2 cut(s) 438, 691
MspR9I CCNGG 2 cut(s) 438, 692
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 629, 696
NciI CCSGG 2 cut(s) 438, 692
NdeI CATATG 1 cut(s) 490
NdeII GATC 4 cut(s) 40, 502, 660, 712
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 3 cut(s) 667, 668, 834
PceI AGGCCT 2 cut(s) 210, 274
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 161, 819
PflMI CCANNNNNTGG 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 2 cut(s) 128, 739
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 667, 668, 834
PspOMI GGGCCC 1 cut(s) 665
PspPI GGNCC 3 cut(s) 665, 666, 833
PstNI CAGNNNCTG 1 cut(s) 410
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 2 cut(s) 591, 827
RsaNI GTAC 2 cut(s) 590, 826
RseI CAYNNNNRTG 2 cut(s) 78, 720
SaqAI TTAA 2 cut(s) 60, 144
SatI GCNGC 2 cut(s) 127, 738
Sau3AI GATC 4 cut(s) 40, 502, 660, 712
Sau96I GGNCC 3 cut(s) 665, 666, 833
ScaI AGTACT 1 cut(s) 591
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 438, 692
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 4 cut(s) 82, 465, 511, 783
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 78, 720
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 245, 266, 514, 766
SseBI AGGCCT 2 cut(s) 210, 274
SsiI CCGC 3 cut(s) 630, 647, 836
SspMI CTAG 1 cut(s) 856
StuI AGGCCT 2 cut(s) 210, 274
StyD4I CCNGG 2 cut(s) 436, 690
StyI CCWWGG 2 cut(s) 211, 341
TaaI ACNGT 2 cut(s) 236, 448
TaiI ACGT 2 cut(s) 201, 258
TaqI TCGA 1 cut(s) 822
TasI AATT 4 cut(s) 245, 266, 514, 766
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 2 cut(s) 161, 819
Tru1I TTAA 2 cut(s) 60, 144
Tru9I TTAA 2 cut(s) 60, 144
TscAI CASTG 2 cut(s) 301, 574
TseI GCWGC 2 cut(s) 126, 737
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 301, 574
Van91I CCANNNNNTGG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 2 cut(s) 266, 514
XspI CTAG 1 cut(s) 856
ZrmI AGTACT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.