Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

3154698 .. 3158053

Gene Structure 3356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1048100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGGATTGAGATGGTGGCGCCCAATCGCAAAGGCAATAAGGAGTTTCTGGAATTGGCGGAGGTGACGAATTCGAAAAGCAAGACCAGAAAGTGCCGGCGGCGTCAGCGGAAGATGTCGCCGGTTCAGAAGCTGTACGAGACTTGCAAGGAAGTCTTTTCGTCTGGTGGGGCCGGGGTTATACCCCCCGCTGATGATATCCAACGGCTATCCTCTGTTTTGGGTGCCATTAAGCCTGCTGATGTCGGCCTGACTCCTGATTTGCCGTACTTCAGGATGACAGTAGCTAGACGAACCCCGGCAATAACCTACCTGCACCTTTACGAGTGCGAAAAATATTCGATGGGGATATTTTGCTTGCCGCCTTCCGGTATCCTACCGCTTCATAATCACCCTGGAATGACTGTATTCAGTAAGCTTCTGTTTGGGACAATGCACATCAAATCCTATGATTGGGTGGCTGATGCCTCGGAGAGGACATTGGCACGTGCCCCGGAGAAGACGTTGGCAAGTGCCCCGGAGAGTGCCCCGGAGAAGACATTGGCAAGTGCCCCGGAGGAAACGTTGGCAAGTACGCCGGGGAAAACATTGGCAAGTGCGAATCCTTCATTAGTTGGATGTTCTCTCGTTCAAGCACCGCCTGGTGTTCGTCTGGCTAAAGTTAAGGCTGACGCTGATTTCACTGCTGCTTGCGACCCTTCCATCCTCTATCCAGCTGATGGAGGCAACATGCATTGCTTCACAGCAGTGACAGCATGCGCAGTGCTCGATGTGCTTGGCCCTCCATATTCTGATCCTGACGGTCGGCACTGCCAATACTACATTGATCACCCATTCCCTCGTTTCCCAGATGGGGGAGTATCTGTGCCAGAAGATGAGAAGGACGGCTATGCTTGGCTTGAAGAGAGAGAGAAACCTGATGACTTAGCTGTAGTTGGAGCCATCTACAGAGGCCCCAGAATACAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

325

Amino Acids

35.24

Weight (kDa)

6.4

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	73 - 321	7.7e-70	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	760
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	19, 224
AccB7I	CCANNNNNTGG	1 cut(s)	719
AciI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 638
AclI	AACGTT	1 cut(s)	563
AclWI	GGATC	1 cut(s)	788
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	256
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	2 cut(s)	20, 103
AfaI	GTAC	3 cut(s)	137, 269, 574
AfiI	CCNNNNNNNGG	6 cut(s)	368, 453, 474, 719, 853, 854
AgsI	TTSAA	2 cut(s)	632, 902
AjnI	CCWGG	2 cut(s)	394, 640
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	133, 287, 418, 716, 929
AluI	AGCT	5 cut(s)	133, 287, 418, 716, 929
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	788
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	171, 247, 778, 952
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspLEI	GCGC	2 cut(s)	22, 761
AspS9I	GGNCC	3 cut(s)	171, 779, 953
AsuC2I	CCSGG	7 cut(s)	175, 299, 494, 518, 530, 554, 579
AsuHPI	GGTGA	3 cut(s)	76, 383, 821
AsuII	TTCGAA	1 cut(s)	74
BaeGI	GKGCMC	4 cut(s)	493, 517, 529, 553
BanI	GGYRCC	2 cut(s)	19, 224
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	506, 542
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	6 cut(s)	7, 337, 710, 713, 845, 950
BceAI	ACGGC	3 cut(s)	221, 250, 901
BciT130I	CCWGG	2 cut(s)	396, 642
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	7 cut(s)	175, 299, 494, 518, 530, 554, 579
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	930, 946
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	101, 362, 687
BlsI	GCNGC	3 cut(s)	102, 363, 688
Bme1390I	CCNGG	9 cut(s)	175, 299, 396, 494, 518, 530, 554, 579, 642
BmgT120I	GGNCC	3 cut(s)	171, 779, 953
BmiI	GGNNCC	5 cut(s)	21, 172, 226, 940, 955
BmrFI	CCNGG	9 cut(s)	175, 299, 396, 494, 518, 530, 554, 579, 642
BmsI	GCATC	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	506, 542
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	7 cut(s)	175, 299, 494, 518, 530, 554, 579
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	20, 103
BsaJI	CCNNGG	9 cut(s)	174, 297, 394, 468, 492, 516, 528, 552, 578
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	6 cut(s)	488, 518, 548, 578, 849, 879
Bsc4I	CCNNNNNNNGG	6 cut(s)	368, 453, 474, 719, 853, 854
Bse118I	RCCGGY	2 cut(s)	96, 121
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	396, 642
BseDI	CCNNGG	9 cut(s)	174, 297, 394, 468, 492, 516, 528, 552, 578
BseGI	GGATG	3 cut(s)	282, 623, 702
BseLI	CCNNNNNNNGG	6 cut(s)	368, 453, 474, 719, 853, 854
BseMI	GCAATG	1 cut(s)	733
BseSI	GKGCMC	4 cut(s)	493, 517, 529, 553
BseXI	GCAGC	1 cut(s)	673
BsgI	GTGCAG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	805
BshFI	GGCC	4 cut(s)	173, 249, 780, 954
BshNI	GGYRCC	2 cut(s)	19, 224
BsiEI	CGRYCG	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	768
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	6 cut(s)	368, 453, 474, 719, 853, 854
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	173, 249, 780, 954
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	5 cut(s)	493, 517, 529, 553, 768
Bsp143I	GATC	2 cut(s)	793, 826
BspACI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 638
BspANI	GGCC	4 cut(s)	173, 249, 780, 954
BspLI	GGNNCC	5 cut(s)	21, 172, 226, 940, 955
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	788
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	19, 224
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	2 cut(s)	96, 121
BssAI	RCCGGY	2 cut(s)	96, 121
BssECI	CCNNGG	9 cut(s)	174, 297, 394, 468, 492, 516, 528, 552, 578
BssMI	GATC	2 cut(s)	793, 826
BssNI	GRCGYC	2 cut(s)	20, 103
Bst2UI	CCWGG	2 cut(s)	396, 642
Bst4CI	ACNGT	3 cut(s)	283, 406, 803
Bst6I	CTCTTC	1 cut(s)	897
BstACI	GRCGYC	2 cut(s)	20, 103
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	5 cut(s)	98, 237, 359, 691, 757
BstDEI	CTNAG	1 cut(s)	925
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	282, 623, 702
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 761
BstKTI	GATC	2 cut(s)	796, 829
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	793, 826
BstMCI	CGRYCG	1 cut(s)	805
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 752, 772
BstNI	CCWGG	2 cut(s)	396, 642
BstNSI	RCATGY	2 cut(s)	733, 759
BstSCI	CCNGG	9 cut(s)	173, 297, 394, 492, 516, 528, 552, 577, 640
BstSFI	CTRYAG	2 cut(s)	930, 946
BstSLI	GKGCMC	4 cut(s)	493, 517, 529, 553
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	2 cut(s)	506, 542
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	4 cut(s)	173, 249, 780, 954
BtsCI	GGATG	3 cut(s)	282, 623, 702
BtsI	GCAGTG	4 cut(s)	681, 753, 768, 808
BtsIMutI	CAGTG	4 cut(s)	681, 753, 768, 808
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	5 cut(s)	98, 237, 359, 691, 757
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	22, 761
Cfr10I	RCCGGY	2 cut(s)	96, 121
Cfr13I	GGNCC	3 cut(s)	171, 779, 953
CseI	GACGC	2 cut(s)	92, 680
Csp6I	GTAC	3 cut(s)	136, 268, 573
CviAII	CATG	2 cut(s)	730, 756
CviQI	GTAC	3 cut(s)	136, 268, 573
DdeI	CTNAG	1 cut(s)	925
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	2 cut(s)	795, 828
DpnII	GATC	2 cut(s)	793, 826
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
EciI	GGCGGA	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	394, 640
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	735
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
FaeI	CATG	2 cut(s)	733, 759
FaiI	YATR	7 cut(s)	182, 387, 450, 731, 757, 787, 891
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	729, 755
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	3 cut(s)	101, 362, 687
FokI	GGATG	3 cut(s)	289, 630, 689
Fsp4HI	GCNGC	3 cut(s)	101, 362, 687
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	760
GlaI	GCGC	2 cut(s)	21, 760
GluI	GCNGC	3 cut(s)	101, 362, 687
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	173, 249, 780, 954
HgaI	GACGC	2 cut(s)	92, 680
HhaI	GCGC	2 cut(s)	22, 761
Hin1I	GRCGYC	2 cut(s)	20, 103
Hin1II	CATG	2 cut(s)	733, 759
Hin6I	GCGC	2 cut(s)	20, 759
HinP1I	GCGC	2 cut(s)	20, 759
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	253, 601
HphI	GGTGA	3 cut(s)	76, 383, 821
Hpy188I	TCNGA	3 cut(s)	129, 472, 793
Hpy188III	TCNNGA	4 cut(s)	50, 257, 274, 797
HpyAV	CCTTC	4 cut(s)	375, 615, 708, 874
HpyCH4III	ACNGT	3 cut(s)	283, 406, 803
HpyCH4IV	ACGT	3 cut(s)	487, 503, 563
HpyCH4V	TGCA	4 cut(s)	147, 316, 436, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 752, 772
HpyF3I	CTNAG	1 cut(s)	925
HpySE526I	ACGT	3 cut(s)	487, 503, 563
Hsp92I	GRCGYC	2 cut(s)	20, 103
Hsp92II	CATG	2 cut(s)	733, 759
HspAI	GCGC	2 cut(s)	20, 759
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	793, 826
LmnI	GCTCC	1 cut(s)	938
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	3 cut(s)	487, 503, 563
MaeIII	GTNAC	2 cut(s)	64, 748
MalI	GATC	2 cut(s)	795, 828
MboI	GATC	2 cut(s)	793, 826
MboII	GAAGA	5 cut(s)	124, 511, 547, 884, 914
MhlI	GDGCHC	5 cut(s)	493, 517, 529, 553, 768
MluCI	AATT	3 cut(s)	53, 70, 970
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	3 cut(s)	226, 595, 916
Mph1103I	ATGCAT	1 cut(s)	735
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	2 cut(s)	231, 663
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	3 cut(s)	109, 191, 716
MspR9I	CCNGG	9 cut(s)	175, 299, 396, 494, 518, 530, 554, 579, 642
MvaI	CCWGG	2 cut(s)	396, 642
MwoI	GCNNNNNNNGC	3 cut(s)	106, 752, 772
NaeI	GCCGGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	7 cut(s)	175, 299, 494, 518, 530, 554, 579
NdeII	GATC	2 cut(s)	793, 826
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	733, 759
NlaIV	GGNNCC	5 cut(s)	21, 172, 226, 940, 955
NmuCI	GTSAC	2 cut(s)	64, 748
NsbI	TGCGCA	1 cut(s)	760
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	2 cut(s)	733, 759
NspV	TTCGAA	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	759
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	102, 363, 688
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	23
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	488
Psp1406I	AACGTT	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	394, 640
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	394, 640
PspN4I	GGNNCC	5 cut(s)	21, 172, 226, 940, 955
PspPI	GGNCC	3 cut(s)	171, 779, 953
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	137, 269, 574
RsaNI	GTAC	3 cut(s)	136, 268, 573
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	231, 663
SatI	GCNGC	3 cut(s)	101, 362, 687
Sau3AI	GATC	2 cut(s)	793, 826
Sau96I	GGNCC	3 cut(s)	171, 779, 953
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	9 cut(s)	175, 299, 396, 494, 518, 530, 554, 579, 642
SduI	GDGCHC	5 cut(s)	493, 517, 529, 553, 768
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	2 cut(s)	930, 946
SfoI	GGCGCC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	3 cut(s)	53, 70, 970
SsiI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 638
SspDI	GGCGCC	1 cut(s)	19
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	9 cut(s)	173, 297, 394, 492, 516, 528, 552, 577, 640
TaaI	ACNGT	3 cut(s)	283, 406, 803
TaiI	ACGT	3 cut(s)	490, 506, 566
TaqI	TCGA	3 cut(s)	74, 341, 768
TasI	AATT	3 cut(s)	53, 70, 970
TauI	GCSGC	2 cut(s)	103, 364
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	231, 663
Tru9I	TTAA	2 cut(s)	231, 663
TscAI	CASTG	4 cut(s)	688, 753, 768, 815
TseFI	GTSAC	2 cut(s)	64, 748
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	2 cut(s)	64, 748
TspDTI	ATGAA	2 cut(s)	374, 597
TspRI	CASTG	4 cut(s)	688, 753, 768, 815
Van91I	CCANNNNNTGG	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	472
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	2 cut(s)	733, 759
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.