Rroxscaffold_6G00389280

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002785
Physical Location & Seq
Forward (+)
2709620 .. 2712630
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389280.1

Sequence Viewer

Length: 963 bp
ATGGGGCAGCACTTACCTCTGTTTGACAGTTTCCTTGGTTTATCTCGAAACTATCGATCCATCAGTTTGTGTTCTGTGGTGTTGAAAGTTGGAGAGAGATCGATTGATATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGGGTAGAGATCGTCATCACCACAAGGTTAATGTTATGGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAGAAAGTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTTTGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCGACATGTGGAGGAATTGTGCAGCGTTCTTGATAAATTTAGGCCAGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTCAAAGGCACTCCAAGGGTTACATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGGAATGACTGTTTTCAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTGTCAAGAATTCAGATGCTTCTCAAGTGAGATTGGCAAAGTTGAAGGCTGATAGCGTATTCACTGCCCCTTGCAAAACATCAGTACTATATCCAACAACAGGTGGCAACATCCACGCCTTCACCGCCATAACTCCTTGTGCGGTGCTTGATGTGATCGGGCCTCCCTATTCTAAGGAAGATGGCCGGGACTGCTCATATTACAAAGATCATCCCTATGCTTCGTATTCAGATGCAAAAGTAACTGAAGAGGAAGGTGATCATTATGGGTGGTTGGAAGAGATTGAGATGCCTGATAACTCAGAAATGGATGGAATCGAGTACTTGGGTCCGCAGATTATTGAGACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

320

Amino Acids

35.82

Weight (kDa)

7.62

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 121 - 316 1.5e-72 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 515
AciI CCGC 3 cut(s) 735, 752, 941
AclWI GGATC 2 cut(s) 51, 602
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 2 cut(s) 371, 619
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 2 cut(s) 696, 932
AfiI CCNNNNNNNGG 2 cut(s) 515, 710
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 4 cut(s) 85, 310, 418, 655
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 294, 947
AlwI GGATC 2 cut(s) 51, 602
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 4 cut(s) 313, 377, 770, 793
ApeKI GCWGC 3 cut(s) 7, 231, 357
ApoI RAATTY 2 cut(s) 371, 619
AspS9I GGNCC 2 cut(s) 770, 938
AsuC2I CCSGG 2 cut(s) 543, 797
AsuHPI GGTGA 3 cut(s) 149, 724, 878
AvaII GGWCC 1 cut(s) 938
BbvI GCAGC 3 cut(s) 19, 243, 369
BccI CCATC 4 cut(s) 68, 546, 785, 914
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 2 cut(s) 543, 797
BcoDI GTCTC 2 cut(s) 294, 947
BfaI CTAG 1 cut(s) 961
BisI GCNGC 3 cut(s) 8, 232, 358
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 3 cut(s) 9, 233, 359
BmcAI AGTACT 2 cut(s) 696, 932
Bme1390I CCNGG 2 cut(s) 543, 797
Bme18I GGWCC 1 cut(s) 938
BmgT120I GGNCC 2 cut(s) 770, 938
BmiI GGNNCC 1 cut(s) 939
BmrFI CCNGG 2 cut(s) 543, 797
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 5 cut(s) 190, 570, 616, 832, 888
BmuI ACTGGG 1 cut(s) 581
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 2 cut(s) 543, 797
Bsa29I ATCGAT 2 cut(s) 55, 101
BsaBI GATNNNNATC 2 cut(s) 153, 584
BsaJI CCNNGG 3 cut(s) 34, 316, 446
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 710
Bse1I ACTGG 2 cut(s) 520, 576
Bse8I GATNNNNATC 2 cut(s) 153, 584
BseCI ATCGAT 2 cut(s) 55, 101
BseDI CCNNGG 3 cut(s) 34, 316, 446
BseGI GGATG 4 cut(s) 538, 720, 820, 925
BseJI GATNNNNATC 2 cut(s) 153, 584
BseLI CCNNNNNNNGG 2 cut(s) 515, 710
BseMII CTCAG 2 cut(s) 420, 924
BseNI ACTGG 2 cut(s) 520, 576
BseXI GCAGC 3 cut(s) 19, 243, 369
BsgI GTGCAG 2 cut(s) 250, 376
BshFI GGCC 4 cut(s) 315, 379, 772, 795
BshVI ATCGAT 2 cut(s) 55, 101
BsiSI CCGG 2 cut(s) 543, 796
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 2 cut(s) 515, 710
BsmAI GTCTC 2 cut(s) 294, 947
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 812
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 4 cut(s) 315, 379, 772, 795
Bsp143I GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 3 cut(s) 735, 752, 941
BspANI GGCC 4 cut(s) 315, 379, 772, 795
BspCNI CTCAG 2 cut(s) 421, 923
BspDI ATCGAT 2 cut(s) 55, 101
BspLI GGNNCC 1 cut(s) 939
BspPI GGATC 2 cut(s) 51, 602
BsrI ACTGG 2 cut(s) 520, 576
BssECI CCNNGG 3 cut(s) 34, 316, 446
BssMI GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
BssT1I CCWWGG 3 cut(s) 34, 316, 446
Bst4CI ACNGT 2 cut(s) 29, 553
Bst6I CTCTTC 2 cut(s) 852, 882
BstDEI CTNAG 4 cut(s) 395, 429, 783, 910
BstF5I GGATG 4 cut(s) 538, 720, 820, 925
BstKTI GATC 7 cut(s) 59, 101, 151, 610, 768, 820, 871
BstMAI GTCTC 2 cut(s) 294, 947
BstMBI GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
BstMWI GCNNNNNNNGC 2 cut(s) 734, 801
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 541, 795
BstV1I GCAGC 3 cut(s) 19, 243, 369
Bsu15I ATCGAT 2 cut(s) 55, 101
BsuRI GGCC 4 cut(s) 315, 379, 772, 795
BsuTUI ATCGAT 2 cut(s) 55, 101
BtsCI GGATG 4 cut(s) 538, 720, 820, 925
BtsI GCAGTG 2 cut(s) 406, 672
BtsIMutI CAGTG 2 cut(s) 406, 672
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 770, 938
ClaI ATCGAT 2 cut(s) 55, 101
Csp6I GTAC 2 cut(s) 695, 931
CviAII CATG 2 cut(s) 188, 341
CviJI RGCY 9 cut(s) 122, 315, 379, 394, 421, 565, 659, 772, 795
CviKI_1 RGCY 9 cut(s) 122, 315, 379, 394, 421, 565, 659, 772, 795
CviQI GTAC 2 cut(s) 695, 931
DdeI CTNAG 4 cut(s) 395, 429, 783, 910
DpnI GATC 7 cut(s) 58, 100, 150, 609, 767, 819, 870
DpnII GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 852, 882
EarI CTCTTC 2 cut(s) 852, 882
Eco130I CCWWGG 3 cut(s) 34, 316, 446
Eco147I AGGCCT 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 619
EcoT14I CCWWGG 3 cut(s) 34, 316, 446
ErhI CCWWGG 3 cut(s) 34, 316, 446
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 2 cut(s) 191, 344
FaqI GGGAC 1 cut(s) 812
FatI CATG 2 cut(s) 187, 340
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 3 cut(s) 8, 232, 358
FokI GGATG 4 cut(s) 525, 707, 807, 932
Fsp4HI GCNGC 3 cut(s) 8, 232, 358
FspBI CTAG 1 cut(s) 961
GluI GCNGC 3 cut(s) 8, 232, 358
HaeIII GGCC 4 cut(s) 315, 379, 772, 795
HapII CCGG 2 cut(s) 543, 796
Hin1II CATG 2 cut(s) 191, 344
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 3 cut(s) 266, 282, 924
HpaII CCGG 2 cut(s) 543, 796
HphI GGTGA 3 cut(s) 149, 724, 878
Hpy188I TCNGA 4 cut(s) 265, 625, 841, 913
Hpy188III TCNNGA 3 cut(s) 45, 365, 616
HpyAV CCTTC 5 cut(s) 238, 339, 649, 739, 857
HpyCH4III ACNGT 2 cut(s) 29, 553
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 231, 277, 357, 409, 477, 583, 684, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 801
HpyF3I CTNAG 4 cut(s) 395, 429, 783, 910
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 191, 344
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
Lsp1109I GCAGC 3 cut(s) 19, 243, 369
LweI GCATC 5 cut(s) 190, 570, 616, 832, 888
MaeI CTAG 1 cut(s) 961
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 451, 850
MalI GATC 7 cut(s) 58, 100, 150, 609, 767, 819, 870
MboI GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
MboII GAAGA 7 cut(s) 249, 252, 395, 406, 800, 869, 899
MluCI AATT 3 cut(s) 350, 371, 619
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 3 cut(s) 70, 728, 864
MnlI CCTC 9 cut(s) 27, 112, 210, 340, 345, 424, 537, 783, 853
MseI TTAA 2 cut(s) 168, 249
MslI CAYNNNNRTG 2 cut(s) 186, 825
MspI CCGG 2 cut(s) 543, 796
MspR9I CCNGG 2 cut(s) 543, 797
Mva1269I GAATGC 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 734, 801
NciI CCSGG 2 cut(s) 543, 797
NdeI CATATG 1 cut(s) 595
NdeII GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
NlaIII CATG 2 cut(s) 191, 344
NlaIV GGNNCC 1 cut(s) 939
NspI RCATGY 1 cut(s) 344
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 266, 924
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 3 cut(s) 9, 233, 359
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 939
PspPI GGNCC 2 cut(s) 770, 938
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 696, 932
RsaNI GTAC 2 cut(s) 695, 931
RseI CAYNNNNRTG 2 cut(s) 186, 825
SaqAI TTAA 2 cut(s) 168, 249
SatI GCNGC 3 cut(s) 8, 232, 358
Sau3AI GATC 7 cut(s) 56, 98, 148, 607, 765, 817, 868
Sau96I GGNCC 2 cut(s) 770, 938
ScaI AGTACT 2 cut(s) 696, 932
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 543, 797
SetI ASST 9 cut(s) 19, 168, 213, 249, 306, 435, 567, 715, 868
SfaNI GCATC 5 cut(s) 190, 570, 616, 832, 888
SinI GGWCC 1 cut(s) 938
SmiMI CAYNNNNRTG 2 cut(s) 186, 825
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 3 cut(s) 350, 371, 619
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 3 cut(s) 735, 752, 941
SspMI CTAG 1 cut(s) 961
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 541, 795
StyI CCWWGG 3 cut(s) 34, 316, 446
TaaI ACNGT 2 cut(s) 29, 553
TaiI ACGT 1 cut(s) 306
TaqI TCGA 5 cut(s) 46, 55, 101, 337, 927
TasI AATT 3 cut(s) 350, 371, 619
TatI WGTACW 2 cut(s) 694, 930
TfiI GAWTC 2 cut(s) 266, 924
Tru1I TTAA 2 cut(s) 168, 249
Tru9I TTAA 2 cut(s) 168, 249
TscAI CASTG 2 cut(s) 406, 679
TseI GCWGC 3 cut(s) 7, 231, 357
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 2 cut(s) 406, 679
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 2 cut(s) 371, 619
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 961
ZrmI AGTACT 2 cut(s) 696, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.