Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

25191205 .. 25194697

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G270900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGATTGAGACGACGACGCCCAATCGCAAAGGTAACAAGGAGATTTACGGATTGCCGGTGGAGACGAATTCGCATAACAAAACCAGGAAGTGCCGGCGACGTCATCGGAAGATGTCGCCGGTTCAGAGGCTATACCAGACGTGCAAGGATGTCTTTTCCTTTTGTGGTGCCGGGATTGTTCCCTCCCCTGAAGATATCCAACGGCTACGCTCTGTTTTGGATACCATGAAACCTGCTGATGTCGGCCTCACTCCTGAATTGCCGTACTTCCGGATGACAGTAGCTAGACGAACCCCAGCAATAACATACCTGCACCTTCACGAGTGTGAAAAATTTTCAATGGGGATATTTTGCTTGCCACCTTCAGGTGTCCTTCCCCTTCATAATCACCCTGGAATGACGGTTTTCAGTAAACTTCTCTTTGGGACCATGCATATCAAGTCCTATGATTGGGTGGCTGATGCAACAGAGGACAAATCCACAAGTGCGAATCCTTCACCAGCTACCCCTCCTGGTGTTCGTTTGGCCAAAGTTAAGGTTGATGCCGATTTTACTGCTCCTTGCAACACTTCCATCCTATATCCAGCTGATGGAGGGAACATGCACTGCTTCACAGCAGTGACAGCATGCGCGGTGCTTGATGTGCTCGGCCCCCCATATTCTGATCCCGATGGTCGACACTGCCAATACTACCTTGATTTCCCATTTTCTCATTTCTCAGTTGATGGAGTATCAGTGGCTGAAGAAGAGAAGGAAGGTTATGCTTGGCTTCAAGAGATAGAGAAACCGGAGGACTTAGCTGTAGATGGAGCCAAGTACAGGGGCCCCAAAATAGTGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

283

Amino Acids

31.35

Weight (kDa)

6.79

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	106
Acc36I	ACCTGC	2 cut(s)	244, 321
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	679
AccII	CGCG	1 cut(s)	635
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	70, 335
AcuI	CTGAAG	3 cut(s)	213, 351, 765
AcyI	GRCGYC	2 cut(s)	20, 103
AfaI	GTAC	2 cut(s)	269, 821
AfiI	CCNNNNNNNGG	4 cut(s)	368, 453, 593, 822
AgsI	TTSAA	2 cut(s)	342, 776
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	3 cut(s)	86, 394, 514
AleI	CACNNNNGTG	2 cut(s)	327, 620
AluBI	AGCT	4 cut(s)	287, 506, 590, 803
AluI	AGCT	4 cut(s)	287, 506, 590, 803
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	5, 59
AlwI	GGATC	1 cut(s)	662
AlwNI	CAGNNNCTG	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	4 cut(s)	247, 528, 652, 826
ApaI	GGGCCC	1 cut(s)	830
ApoI	RAATTY	2 cut(s)	70, 335
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	4 cut(s)	429, 653, 826, 827
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	383, 492
AvaII	GGWCC	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	651
BccI	CCATC	5 cut(s)	584, 587, 668, 722, 803
BceAI	ACGGC	2 cut(s)	221, 250
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	3 cut(s)	88, 396, 516
BciVI	GTATCC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	5, 59
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	2 cut(s)	244, 321
BfuI	GTATCC	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	88, 175, 396, 516
Bme18I	GGWCC	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	144
BmgT120I	GGNCC	4 cut(s)	429, 653, 826, 827
BmiI	GGNNCC	7 cut(s)	172, 430, 655, 814, 827, 828, 829
BmrFI	CCNGG	4 cut(s)	88, 175, 396, 516
BmsI	GCATC	2 cut(s)	454, 535
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	2 cut(s)	20, 103
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	2 cut(s)	273, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 453, 593, 822
Bse118I	RCCGGY	3 cut(s)	58, 96, 121
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	3 cut(s)	88, 396, 516
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	3 cut(s)	157, 282, 576
BseLI	CCNNNNNNNGG	4 cut(s)	368, 453, 593, 822
BseMII	CTCAG	1 cut(s)	735
BseSI	GKGCMC	1 cut(s)	830
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	635
BshFI	GGCC	4 cut(s)	249, 530, 654, 828
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	6 cut(s)	59, 97, 122, 174, 274, 791
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	4 cut(s)	368, 453, 593, 822
BsmAI	GTCTC	2 cut(s)	5, 59
BsmBI	CGTCTC	2 cut(s)	5, 59
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	249, 530, 654, 828
Bsp120I	GGGCCC	1 cut(s)	826
Bsp1286I	GDGCHC	2 cut(s)	651, 830
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	667
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	4 cut(s)	249, 530, 654, 828
BspCNI	CTCAG	1 cut(s)	734
BspEI	TCCGGA	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	7 cut(s)	172, 430, 655, 814, 827, 828, 829
BspMI	ACCTGC	2 cut(s)	244, 321
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	170
BsrFI	RCCGGY	3 cut(s)	58, 96, 121
BssAI	RCCGGY	3 cut(s)	58, 96, 121
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	667
BssNI	GRCGYC	2 cut(s)	20, 103
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	88, 396, 516
Bst4CI	ACNGT	2 cut(s)	283, 406
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	2 cut(s)	20, 103
BstC8I	GCNNGC	3 cut(s)	98, 359, 631
BstDEI	CTNAG	2 cut(s)	721, 799
BstF5I	GGATG	3 cut(s)	157, 282, 576
BstFNI	CGCG	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	2 cut(s)	5, 59
BstMBI	GATC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 646
BstNI	CCWGG	3 cut(s)	88, 396, 516
BstNSI	RCATGY	2 cut(s)	607, 633
BstSCI	CCNGG	4 cut(s)	86, 173, 394, 514
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	4 cut(s)	249, 530, 654, 828
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	157, 282, 576
BtsI	GCAGTG	3 cut(s)	607, 627, 682
BtsIMutI	CAGTG	4 cut(s)	607, 627, 682, 744
BveI	ACCTGC	2 cut(s)	244, 321
Cac8I	GCNNGC	3 cut(s)	98, 359, 631
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	3 cut(s)	58, 96, 121
Cfr13I	GGNCC	4 cut(s)	429, 653, 826, 827
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	268, 820
CviAII	CATG	4 cut(s)	229, 433, 604, 630
CviQI	GTAC	2 cut(s)	268, 820
DdeI	CTNAG	2 cut(s)	721, 799
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	830
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	429
Eco57I	CTGAAG	3 cut(s)	213, 351, 765
EcoO109I	RGGNCCY	2 cut(s)	826, 827
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	86, 394, 514
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	830
Esp3I	CGTCTC	2 cut(s)	5, 59
FaeI	CATG	4 cut(s)	232, 436, 607, 633
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	4 cut(s)	228, 432, 603, 629
FblI	GTMKAC	1 cut(s)	679
FokI	GGATG	3 cut(s)	164, 289, 563
FriOI	GRGCYC	1 cut(s)	830
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	634
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	249, 530, 654, 828
HapII	CCGG	6 cut(s)	59, 97, 122, 174, 274, 791
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	635
Hin1I	GRCGYC	2 cut(s)	20, 103
Hin1II	CATG	4 cut(s)	232, 436, 607, 633
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	680
HindII	GTYRAC	1 cut(s)	680
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	6 cut(s)	59, 97, 122, 174, 274, 791
HphI	GGTGA	2 cut(s)	383, 492
Hpy166II	GTNNAC	2 cut(s)	416, 680
Hpy188I	TCNGA	3 cut(s)	111, 129, 667
Hpy188III	TCNNGA	5 cut(s)	257, 274, 323, 671, 776
Hpy8I	GTNNAC	2 cut(s)	416, 680
Hpy99I	CGWCG	3 cut(s)	19, 22, 105
HpyAV	CCTTC	7 cut(s)	329, 375, 386, 392, 507, 748, 752
HpyCH4III	ACNGT	2 cut(s)	283, 406
HpyCH4IV	ACGT	2 cut(s)	103, 143
HpyCH4V	TGCA	6 cut(s)	147, 316, 436, 467, 567, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 646
HpyF3I	CTNAG	2 cut(s)	721, 799
HpySE526I	ACGT	2 cut(s)	103, 143
Hsp92I	GRCGYC	2 cut(s)	20, 103
Hsp92II	CATG	4 cut(s)	232, 436, 607, 633
HspAI	GCGC	1 cut(s)	633
Kpn2I	TCCGGA	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	667
LmnI	GCTCC	2 cut(s)	565, 812
LweI	GCATC	2 cut(s)	454, 535
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	103, 143
MaeIII	GTNAC	2 cut(s)	35, 622
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	4 cut(s)	124, 206, 758, 761
MhlI	GDGCHC	2 cut(s)	651, 830
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	4 cut(s)	70, 260, 335, 844
MluNI	TGGCCA	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	123, 196, 260, 466, 522, 590, 787
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	327, 620
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	6 cut(s)	59, 97, 122, 174, 274, 791
MspR9I	CCNGG	4 cut(s)	88, 175, 396, 516
MvaI	CCWGG	3 cut(s)	88, 396, 516
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	2 cut(s)	626, 646
NaeI	GCCGGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	667
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	4 cut(s)	232, 436, 607, 633
NlaIV	GGNNCC	7 cut(s)	172, 430, 655, 814, 827, 828, 829
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	2 cut(s)	607, 633
OliI	CACNNNNGTG	2 cut(s)	327, 620
PaeI	GCATGC	1 cut(s)	633
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	86, 394, 514
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	3 cut(s)	86, 394, 514
PspN4I	GGNNCC	7 cut(s)	172, 430, 655, 814, 827, 828, 829
PspOMI	GGGCCC	1 cut(s)	826
PspPI	GGNCC	4 cut(s)	429, 653, 826, 827
PstNI	CAGNNNCTG	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	269, 821
RsaNI	GTAC	2 cut(s)	268, 820
RseI	CAYNNNNRTG	2 cut(s)	327, 620
SalI	GTCGAC	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	537
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	4 cut(s)	429, 653, 826, 827
ScrFI	CCNGG	4 cut(s)	88, 175, 396, 516
SduI	GDGCHC	2 cut(s)	651, 830
SfaNI	GCATC	2 cut(s)	454, 535
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	327, 620
SphI	GCATGC	1 cut(s)	633
Sse9I	AATT	4 cut(s)	70, 260, 335, 844
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	86, 173, 394, 514
TaaI	ACNGT	2 cut(s)	283, 406
TaiI	ACGT	2 cut(s)	106, 146
TaqI	TCGA	1 cut(s)	679
TasI	AATT	4 cut(s)	70, 260, 335, 844
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	4 cut(s)	614, 627, 689, 744
TseFI	GTSAC	1 cut(s)	622
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	2 cut(s)	245, 374
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	4 cut(s)	614, 627, 689, 744
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	429
XapI	RAATTY	2 cut(s)	70, 335
XceI	RCATGY	2 cut(s)	607, 633
XmiI	GTMKAC	1 cut(s)	679
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.