Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

351389 .. 353104

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACTATGAGGACTGCGAGGGTTCCAACTCCGCTGCAACAGCTCCTTCGTGCGTGCAGAAACGCTTTTAAAGGTCCCGGAACCGTTCCTTCGCCTCGCCATGTGCAAAAGCTGCGTCGCATCCTCGATAATATGAGACCAGAAGATTTTGGGCTAAGTGGGGATCTGCGGTTCCCCACTCCTAGGGTCAGGTATACAACCATATACGAGTGCAACAAATTTTCGTTGTGCTGCTTTTTTATTCCAGCAAATGGTGTTATCCCACTCCATAACCATCCAGATATGACTGTTTTCAGTAAGCTTCTATTAGGCAAGATGCATATTAAATCATACGATTGGGTTGATCCCGTTAATTCAGATGGCTCCACGCCTGCGCCTCAATTGAGACTGGCCGAGTTGAAAGCTGATAGTGTCTTCACAGCCTCATGCAAAGCATCGGTACTTTATCCAACAAAAGGTGGCAACATCCATGCCTTCACAGCCATAACACCCTGTGCAGTGCTCGATGTGATGGGACCACCCTATTCTATAGAAGATGGCCGGGATTGCACGTATTACAAAGATCATCCCTATGCGGCTTATTCAAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

198

Amino Acids

22.01

Weight (kDa)

9.2

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	3 cut(s)	32, 169, 575
AclWI	GGATC	2 cut(s)	171, 338
AcoI	YGGCCR	2 cut(s)	390, 538
AcsI	RAATTY	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	3 cut(s)	183, 251, 455
AgsI	TTSAA	2 cut(s)	400, 585
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	4 cut(s)	43, 112, 301, 404
AluI	AGCT	4 cut(s)	43, 112, 301, 404
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	130, 379
AlwI	GGATC	2 cut(s)	171, 338
AoxI	GGCC	2 cut(s)	390, 538
ApeKI	GCWGC	3 cut(s)	34, 112, 231
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	74, 515
AsuC2I	CCSGG	2 cut(s)	78, 542
AvaII	GGWCC	2 cut(s)	74, 515
AvrII	CCTAGG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	21, 99, 218
BccI	CCATC	4 cut(s)	282, 353, 505, 530
BcnI	CCSGG	2 cut(s)	78, 542
BcoDI	GTCTC	2 cut(s)	130, 379
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	4 cut(s)	35, 113, 232, 576
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	4 cut(s)	36, 114, 233, 577
Bme1390I	CCNGG	2 cut(s)	78, 542
Bme18I	GGWCC	2 cut(s)	74, 515
BmgT120I	GGNCC	2 cut(s)	74, 515
BmiI	GGNNCC	6 cut(s)	24, 76, 82, 173, 364, 516
BmrFI	CCNGG	2 cut(s)	78, 542
BmsI	GCATC	3 cut(s)	129, 306, 443
BpiI	GAAGAC	1 cut(s)	406
BpuMI	CCSGG	2 cut(s)	78, 542
BsaAI	YACGTR	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 251, 455
Bse1I	ACTGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	4 cut(s)	120, 274, 465, 565
BseLI	CCNNNNNNNGG	3 cut(s)	183, 251, 455
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	21, 99, 218
BsgI	GTGCAG	2 cut(s)	76, 516
BshFI	GGCC	2 cut(s)	392, 540
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	78, 541
BslFI	GGGAC	2 cut(s)	60, 528
BslI	CCNNNNNNNGG	3 cut(s)	183, 251, 455
BsmAI	GTCTC	2 cut(s)	130, 379
BsmFI	GGGAC	2 cut(s)	60, 528
BsnI	GGCC	2 cut(s)	392, 540
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	163, 343, 562
BspACI	CCGC	3 cut(s)	32, 169, 575
BspANI	GGCC	2 cut(s)	392, 540
BspLI	GGNNCC	6 cut(s)	24, 76, 82, 173, 364, 516
BspPI	GGATC	2 cut(s)	171, 338
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	163, 343, 562
BssNAI	GTATAC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	85, 289
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	55, 372
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	4 cut(s)	120, 274, 465, 565
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	3 cut(s)	166, 346, 565
BstMAI	GTCTC	2 cut(s)	130, 379
BstMBI	GATC	3 cut(s)	163, 343, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 112, 479, 546
BstSCI	CCNGG	2 cut(s)	76, 540
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	21, 99, 218
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	392, 540
BtsCI	GGATG	4 cut(s)	120, 274, 465, 565
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	55, 372
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	74, 515
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	101, 426, 470
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	165, 345, 564
DpnII	GATC	3 cut(s)	163, 343, 562
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	494
EaeI	YGGCCR	2 cut(s)	390, 538
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	74, 515
EcoO109I	RGGNCCY	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	104, 429, 473
FaqI	GGGAC	2 cut(s)	60, 528
FatI	CATG	3 cut(s)	100, 425, 469
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	35, 113, 232, 576
FokI	GGATG	4 cut(s)	107, 261, 452, 552
Fsp4HI	GCNGC	4 cut(s)	35, 113, 232, 576
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	35, 113, 232, 576
HaeIII	GGCC	2 cut(s)	392, 540
HapII	CCGG	2 cut(s)	78, 541
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	104, 429, 473
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	299
HpaII	CCGG	2 cut(s)	78, 541
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	56, 99, 484
HpyCH4III	ACNGT	2 cut(s)	85, 289
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	8 cut(s)	37, 57, 106, 213, 319, 429, 497, 549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 112, 479, 546
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	3 cut(s)	104, 429, 473
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	163, 343, 562
LmnI	GCTCC	2 cut(s)	48, 368
LpnPI	CCDG	9 cut(s)	91, 153, 175, 258, 291, 374, 384, 505, 554
Lsp1109I	GCAGC	3 cut(s)	21, 99, 218
LweI	GCATC	3 cut(s)	129, 306, 443
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	551
MalI	GATC	3 cut(s)	165, 345, 564
MboI	GATC	3 cut(s)	163, 343, 562
MboII	GAAGA	3 cut(s)	155, 406, 545
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	3 cut(s)	218, 352, 380
MmeI	TCCRAC	2 cut(s)	50, 473
MnlI	CCTC	6 cut(s)	3, 12, 105, 134, 387, 433
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	3 cut(s)	69, 324, 351
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	78, 541
MspR9I	CCNGG	2 cut(s)	78, 542
MunI	CAATTG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	40, 112, 479, 546
NciI	CCSGG	2 cut(s)	78, 542
NdeII	GATC	3 cut(s)	163, 343, 562
NlaIII	CATG	3 cut(s)	104, 429, 473
NlaIV	GGNNCC	6 cut(s)	24, 76, 82, 173, 364, 516
NmeAIII	GCCGAG	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	36, 114, 233, 577
Ppu21I	YACGTR	1 cut(s)	552
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	6 cut(s)	24, 76, 82, 173, 364, 516
PspPI	GGNCC	2 cut(s)	74, 515
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	69, 324, 351
SatI	GCNGC	4 cut(s)	35, 113, 232, 576
Sau3AI	GATC	3 cut(s)	163, 343, 562
Sau96I	GGNCC	2 cut(s)	74, 515
ScrFI	CCNGG	2 cut(s)	78, 542
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	8 cut(s)	45, 76, 114, 194, 303, 406, 460, 554
SfaNI	GCATC	3 cut(s)	129, 306, 443
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	74, 515
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	218, 352, 380
SsiI	CCGC	3 cut(s)	32, 169, 575
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	76, 540
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	85, 289
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	2 cut(s)	126, 504
TasI	AATT	3 cut(s)	218, 352, 380
TauI	GCSGC	1 cut(s)	578
Tru1I	TTAA	3 cut(s)	69, 324, 351
Tru9I	TTAA	3 cut(s)	69, 324, 351
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	3 cut(s)	34, 112, 231
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	74, 515
XapI	RAATTY	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.