Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

2359487 .. 2361624

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGGATTGAGATGGTGGCGCCCAATCGCAAACGCAATAAGGAGTTTCTGGAATTGGCGGAGGTGACGAATTCGAAAAGCAAGACCAGAAAGTGCCGGCGGCGTCAGCGGAAGATGTCGCCGGTTCAGAAGCTGTACGAGACTTGCAAGGAAGTCTTTTCGTCTGGTGGGGCCGGGGTTATACCCCCCGCTGATGATATCCAACGGCTATCCTCTGTTTTGGGTGCCATGAAGCCTTCTGATGTCGGCCTGACTCCTGATTTGCCGTACTTCAGGATGACAGTAGCTAGACGAACCCCGGCAATAACCTACCAGCACCTTTACCAGTGCGAAAAATTTTCAATGGGGATATTTTGCTTGCCGCCTTCCGGTGTCCTACCGCTTCATAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGGACAATGCACATCAAGTCCTATGATTGGGTGGCTGGTGCCTCGGAGAAGACATTGGCAAGTGCCCTGGAGGAAACGTTGGCAAGTGCCCTGGAGAAGACATTGGCAAGTGCCCCGGAGAAAACATTGGAAAGTGCCCCGGAGAAAACATTGGCAAGTGCGAATCCTTCATTAGTTGGTTGTTCTCTCGTTCAAGCACCGCCTGGTGTTCGTCTGGCTAAAGTTAAGGTTGACGACGATTTCACTGCTCCTTGCGACCCTTCCATCCTCTATCCAGCTGATGGAGGCAACATGCATTGCTTCACAGCAGTGACAGCATGCGCAGTGCTCGATGTGCTTGGCCCTCCATATTCTGATCCTGACGGTCGGCACTGCCAATACTACATTGATCACCCATTCTCTCGTTTCCCAGATGGGGGAGTATCTGTGCCAGAAGATGAGAAGGACGGCTATGCTTGGCTTGAAGAGATAGAGAAACCTGAGGACTTGGCTGCAGTTGTAGCCGAGTACAGAGGCCCCAGAATACAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

321

Amino Acids

35.04

Weight (kDa)

6.02

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	73 - 317	9.3e-71	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	748
AccB1I	GGYRCC	3 cut(s)	19, 224, 464
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 626
AclI	AACGTT	1 cut(s)	503
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	70, 335
AcuI	CTGAAG	1 cut(s)	256
AcyI	GRCGYC	2 cut(s)	20, 103
AfaI	GTAC	3 cut(s)	137, 269, 935
AfiI	CCNNNNNNNGG	5 cut(s)	368, 453, 707, 841, 842
AgsI	TTSAA	3 cut(s)	342, 620, 890
AjnI	CCWGG	4 cut(s)	394, 492, 516, 628
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	4 cut(s)	133, 287, 418, 704
AluI	AGCT	4 cut(s)	133, 287, 418, 704
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	171, 247, 766, 940
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	2 cut(s)	70, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspLEI	GCGC	2 cut(s)	22, 749
AspS9I	GGNCC	3 cut(s)	171, 767, 941
AsuC2I	CCSGG	4 cut(s)	175, 299, 542, 566
AsuHPI	GGTGA	3 cut(s)	76, 383, 809
AsuII	TTCGAA	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	906
BaeGI	GKGCMC	4 cut(s)	493, 517, 541, 565
BanI	GGYRCC	3 cut(s)	19, 224, 464
BbsI	GAAGAC	2 cut(s)	482, 530
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	4 cut(s)	7, 698, 701, 833
BceAI	ACGGC	3 cut(s)	221, 250, 889
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BciT130I	CCWGG	4 cut(s)	396, 494, 518, 630
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	4 cut(s)	175, 299, 542, 566
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	3 cut(s)	101, 362, 918
BlsI	GCNGC	3 cut(s)	102, 363, 919
Bme1390I	CCNGG	8 cut(s)	175, 299, 396, 494, 518, 542, 566, 630
BmgT120I	GGNCC	3 cut(s)	171, 767, 941
BmiI	GGNNCC	5 cut(s)	21, 172, 226, 466, 943
BmrFI	CCNGG	8 cut(s)	175, 299, 396, 494, 518, 542, 566, 630
BpiI	GAAGAC	2 cut(s)	482, 530
BpmI	CTGGAG	2 cut(s)	515, 539
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	4 cut(s)	175, 299, 542, 566
BsaHI	GRCGYC	2 cut(s)	20, 103
BsaJI	CCNNGG	8 cut(s)	174, 297, 394, 468, 492, 516, 540, 564
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 837, 867
Bsc4I	CCNNNNNNNGG	5 cut(s)	368, 453, 707, 841, 842
Bse118I	RCCGGY	2 cut(s)	96, 121
Bse1I	ACTGG	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	906
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	4 cut(s)	396, 494, 518, 630
BseDI	CCNNGG	8 cut(s)	174, 297, 394, 468, 492, 516, 540, 564
BseGI	GGATG	2 cut(s)	282, 690
BseLI	CCNNNNNNNGG	5 cut(s)	368, 453, 707, 841, 842
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	4 cut(s)	493, 517, 541, 565
BseXI	GCAGC	1 cut(s)	904
Bsh1285I	CGRYCG	1 cut(s)	793
BshFI	GGCC	4 cut(s)	173, 249, 768, 942
BshNI	GGYRCC	3 cut(s)	19, 224, 464
BsiEI	CGRYCG	1 cut(s)	793
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	7 cut(s)	97, 122, 174, 299, 369, 542, 566
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	5 cut(s)	368, 453, 707, 841, 842
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	173, 249, 768, 942
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	5 cut(s)	493, 517, 541, 565, 756
Bsp143I	GATC	2 cut(s)	781, 814
BspACI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 626
BspANI	GGCC	4 cut(s)	173, 249, 768, 942
BspCNI	CTCAG	1 cut(s)	898
BspLI	GGNNCC	5 cut(s)	21, 172, 226, 466, 943
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	1 cut(s)	776
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	3 cut(s)	19, 224, 464
BsrDI	GCAATG	1 cut(s)	721
BsrFI	RCCGGY	2 cut(s)	96, 121
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	2 cut(s)	96, 121
BssECI	CCNNGG	8 cut(s)	174, 297, 394, 468, 492, 516, 540, 564
BssMI	GATC	2 cut(s)	781, 814
BssNI	GRCGYC	2 cut(s)	20, 103
Bst2UI	CCWGG	4 cut(s)	396, 494, 518, 630
Bst4CI	ACNGT	3 cut(s)	283, 406, 791
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	2 cut(s)	20, 103
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	98, 359, 745
BstDEI	CTNAG	1 cut(s)	906
BstF5I	GGATG	2 cut(s)	282, 690
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 749
BstKTI	GATC	2 cut(s)	784, 817
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	781, 814
BstMCI	CGRYCG	1 cut(s)	793
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 740, 760, 926
BstNI	CCWGG	4 cut(s)	396, 494, 518, 630
BstNSI	RCATGY	2 cut(s)	721, 747
BstSCI	CCNGG	8 cut(s)	173, 297, 394, 492, 516, 540, 564, 628
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	4 cut(s)	493, 517, 541, 565
BstV1I	GCAGC	1 cut(s)	904
BstV2I	GAAGAC	2 cut(s)	482, 530
Bsu36I	CCTNAGG	1 cut(s)	906
BsuRI	GGCC	4 cut(s)	173, 249, 768, 942
BtsCI	GGATG	2 cut(s)	282, 690
BtsI	GCAGTG	4 cut(s)	669, 741, 756, 796
BtsIMutI	CAGTG	5 cut(s)	332, 669, 741, 756, 796
Cac8I	GCNNGC	3 cut(s)	98, 359, 745
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	22, 749
Cfr10I	RCCGGY	2 cut(s)	96, 121
Cfr13I	GGNCC	3 cut(s)	171, 767, 941
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	136, 268, 934
CviAII	CATG	3 cut(s)	229, 718, 744
CviQI	GTAC	3 cut(s)	136, 268, 934
DdeI	CTNAG	1 cut(s)	906
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	2 cut(s)	783, 816
DpnII	GATC	2 cut(s)	781, 814
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	394, 492, 516, 628
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	723
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
FaeI	CATG	3 cut(s)	232, 721, 747
FaiI	YATR	8 cut(s)	182, 230, 387, 450, 719, 745, 775, 879
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	3 cut(s)	228, 717, 743
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	101, 362, 918
FokI	GGATG	2 cut(s)	289, 677
Fsp4HI	GCNGC	3 cut(s)	101, 362, 918
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	748
GlaI	GCGC	2 cut(s)	21, 748
GluI	GCNGC	3 cut(s)	101, 362, 918
GsuI	CTGGAG	2 cut(s)	515, 539
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	173, 249, 768, 942
HapII	CCGG	7 cut(s)	97, 122, 174, 299, 369, 542, 566
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	22, 749
Hin1I	GRCGYC	2 cut(s)	20, 103
Hin1II	CATG	3 cut(s)	232, 721, 747
Hin6I	GCGC	2 cut(s)	20, 747
HinP1I	GCGC	2 cut(s)	20, 747
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	253, 589
HpaII	CCGG	7 cut(s)	97, 122, 174, 299, 369, 542, 566
HphI	GGTGA	3 cut(s)	76, 383, 809
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	4 cut(s)	129, 241, 472, 781
Hpy188III	TCNNGA	4 cut(s)	50, 257, 274, 785
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	5 cut(s)	246, 375, 603, 696, 862
HpyCH4III	ACNGT	3 cut(s)	283, 406, 791
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	4 cut(s)	147, 436, 721, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 740, 760, 926
HpyF3I	CTNAG	1 cut(s)	906
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	2 cut(s)	20, 103
Hsp92II	CATG	3 cut(s)	232, 721, 747
HspAI	GCGC	2 cut(s)	20, 747
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	2 cut(s)	781, 814
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	1 cut(s)	904
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	64, 736
MalI	GATC	2 cut(s)	783, 816
MboI	GATC	2 cut(s)	781, 814
MboII	GAAGA	5 cut(s)	124, 487, 535, 872, 902
MhlI	GDGCHC	5 cut(s)	493, 517, 541, 565, 756
MluCI	AATT	4 cut(s)	53, 70, 335, 958
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	55, 223, 478, 490, 704, 704, 780, 901, 932
Mph1103I	ATGCAT	1 cut(s)	723
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	3 cut(s)	109, 191, 704
MspI	CCGG	7 cut(s)	97, 122, 174, 299, 369, 542, 566
MspR9I	CCNGG	8 cut(s)	175, 299, 396, 494, 518, 542, 566, 630
MvaI	CCWGG	4 cut(s)	396, 494, 518, 630
MwoI	GCNNNNNNNGC	4 cut(s)	106, 740, 760, 926
NaeI	GCCGGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	4 cut(s)	175, 299, 542, 566
NdeII	GATC	2 cut(s)	781, 814
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	232, 721, 747
NlaIV	GGNNCC	5 cut(s)	21, 172, 226, 466, 943
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	2 cut(s)	64, 736
NsbI	TGCGCA	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	2 cut(s)	721, 747
NspV	TTCGAA	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	747
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	102, 363, 919
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	503
Psp6I	CCWGG	4 cut(s)	394, 492, 516, 628
PspGI	CCWGG	4 cut(s)	394, 492, 516, 628
PspN4I	GGNNCC	5 cut(s)	21, 172, 226, 466, 943
PspPI	GGNCC	3 cut(s)	171, 767, 941
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	3 cut(s)	137, 269, 935
RsaNI	GTAC	3 cut(s)	136, 268, 934
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	3 cut(s)	101, 362, 918
Sau3AI	GATC	2 cut(s)	781, 814
Sau96I	GGNCC	3 cut(s)	171, 767, 941
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	8 cut(s)	175, 299, 396, 494, 518, 542, 566, 630
SduI	GDGCHC	5 cut(s)	493, 517, 541, 565, 756
SfcI	CTRYAG	1 cut(s)	918
SfoI	GGCGCC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	734
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	4 cut(s)	53, 70, 335, 958
SsiI	CCGC	7 cut(s)	59, 100, 109, 189, 362, 380, 626
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	8 cut(s)	173, 297, 394, 492, 516, 540, 564, 628
TaaI	ACNGT	3 cut(s)	283, 406, 791
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	2 cut(s)	74, 756
TasI	AATT	4 cut(s)	53, 70, 335, 958
TatI	WGTACW	1 cut(s)	933
TauI	GCSGC	2 cut(s)	103, 364
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	5 cut(s)	332, 676, 741, 756, 803
TseFI	GTSAC	2 cut(s)	64, 736
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	2 cut(s)	64, 736
TspDTI	ATGAA	3 cut(s)	245, 374, 585
TspRI	CASTG	5 cut(s)	332, 676, 741, 756, 803
Van91I	CCANNNNNTGG	1 cut(s)	707
XapI	RAATTY	2 cut(s)	70, 335
XceI	RCATGY	2 cut(s)	721, 747
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.