Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

78608717 .. 78611248

Gene Structure 2532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021824

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGGTTGAGACGACGTTGCCCAATCGAAAGGACAACAACAAGGTGCTTCATCCATCGCCGGAGGAGACGAATTCGATCAGCAAGTCCAGGAAGTCCCGGCGACGTCATCGGAAGATGTCGCCGTCGCCGGTGCAGAAGCTATACGAGACGTGCAAGGCTGTGTTTTCCTTTTGCGGCGCCGGGATTATTCCCTCCTCCGAAGATATCCAGAAGTTATGCTCTGTTTTGGATGCTATGAGACCTGTTGATGTTGGCCTGTCTTGTGAGTTGCCATACTTTCAACTTACAACAGCTAGGCGAACCCCGGCAATCACATACTTGCATCTTTTTGAGTGTGACAAATTTTCAATGGGGATATTCTGTTTGCCGCCGTCAGGTGTAATTCCGCTTCATAATCACCCAGGAATGACGGTTTTCAGTAAGCTTCTTTTCGGGACAATGCATATCAAGTCATATGACTGGGTGATTGATGCCCCCCAGAAAACACCAACAATTGAGAATCAGCAACCGACAATTGAGATTCAGCAACTGACAACTGAGAATCAGAATCCGGCAATTGAGAATCAGAAGCCAACACCTGAGAACCCTATTCCTTCCCAAGTTGCACCTCCTGGTACCCGCTTGGCAAAAGTGAAGGTTGATGCCGACTTTACTGCTCCTTGCGACACTAAAATCCTTTATCCAGCTGATGGAGGCAACATGCATTGCTTCACTGCAGTGACGGCATGTGCGGTGCTTGATGTGCTTGGTCCCCCATATTCTGATCCCGACGGTCGCCACTGCCAATACTACCTTGATATCCCATTTTCTCAGTTCACAGTTGATGGAGTATCGGTCCCTGAAGAGGAGAAGGAAGGTTACGCATGGCTTCAAGAGATTGAGAAACAGAAACCAGACGAGCTAGATGTAGTCGGAGCACGGTATAGTGGTCCTCAAATACAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

318

Amino Acids

35.31

Weight (kDa)

5.79

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	76 - 314	2.8e-72	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	109
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	2 cut(s)	179, 617
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	5 cut(s)	177, 371, 389, 622, 734
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	73, 344
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	2 cut(s)	106, 180
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	3 cut(s)	377, 692, 847
AgsI	TTSAA	3 cut(s)	284, 351, 875
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	3 cut(s)	89, 403, 613
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	5 cut(s)	142, 296, 427, 689, 904
AluI	AGCT	5 cut(s)	142, 296, 427, 689, 904
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	4 cut(s)	5, 62, 143, 235
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	73, 344
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	752, 838, 932
AsuC2I	CCSGG	3 cut(s)	100, 184, 308
AsuHPI	GGTGA	2 cut(s)	392, 478
AvaII	GGWCC	3 cut(s)	752, 838, 932
BanI	GGYRCC	2 cut(s)	179, 617
BarI	GAAGNNNNNNTAC	4 cut(s)	375, 407, 845, 877
Bbv12I	GWGCWC	1 cut(s)	922
BccI	CCATC	3 cut(s)	64, 686, 821
BceAI	ACGGC	3 cut(s)	109, 358, 741
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciT130I	CCWGG	3 cut(s)	91, 405, 615
BcnI	CCSGG	3 cut(s)	100, 184, 308
BcoDI	GTCTC	4 cut(s)	5, 62, 143, 235
BfaI	CTAG	2 cut(s)	297, 905
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	2 cut(s)	178, 371
BlsI	GCNGC	2 cut(s)	179, 372
Bme1390I	CCNGG	6 cut(s)	91, 100, 184, 308, 405, 615
Bme18I	GGWCC	3 cut(s)	752, 838, 932
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	752, 838, 932
BmiI	GGNNCC	4 cut(s)	181, 619, 754, 840
BmrFI	CCNGG	6 cut(s)	91, 100, 184, 308, 405, 615
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	4 cut(s)	223, 334, 463, 634
BmuI	ACTGGG	1 cut(s)	472
BpuMI	CCSGG	3 cut(s)	100, 184, 308
BsaHI	GRCGYC	2 cut(s)	106, 180
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	306, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 692, 847
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	3 cut(s)	91, 405, 615
BseDI	CCNNGG	2 cut(s)	306, 403
BseGI	GGATG	2 cut(s)	52, 238
BseLI	CCNNNNNNNGG	3 cut(s)	377, 692, 847
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	3 cut(s)	531, 573, 827
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	3 cut(s)	80, 187, 863
BsgI	GTGCAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	778
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	2 cut(s)	179, 617
BsiEI	CGRYCG	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	6 cut(s)	62, 100, 131, 183, 308, 554
BslFI	GGGAC	4 cut(s)	82, 451, 738, 824
BslI	CCNNNNNNNGG	3 cut(s)	377, 692, 847
BsmAI	GTCTC	4 cut(s)	5, 62, 143, 235
BsmBI	CGTCTC	3 cut(s)	5, 62, 143
BsmFI	GGGAC	4 cut(s)	82, 451, 738, 824
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp143I	GATC	2 cut(s)	78, 766
BspACI	CCGC	5 cut(s)	177, 371, 389, 622, 734
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	532, 574, 826
BspLI	GGNNCC	4 cut(s)	181, 619, 754, 840
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	761
BspT107I	GGYRCC	2 cut(s)	179, 617
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	306, 403
BssMI	GATC	2 cut(s)	78, 766
BssNI	GRCGYC	2 cut(s)	106, 180
Bst2UI	CCWGG	3 cut(s)	91, 405, 615
Bst4CI	ACNGT	4 cut(s)	415, 776, 823, 924
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	2 cut(s)	106, 180
BstDEI	CTNAG	3 cut(s)	540, 582, 813
BstF5I	GGATG	2 cut(s)	52, 238
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	81, 769
BstMAI	GTCTC	4 cut(s)	5, 62, 143, 235
BstMBI	GATC	2 cut(s)	78, 766
BstMCI	CGRYCG	1 cut(s)	778
BstMWI	GCNNNNNNNGC	2 cut(s)	725, 745
BstNI	CCWGG	3 cut(s)	91, 405, 615
BstNSI	RCATGY	2 cut(s)	706, 732
BstSCI	CCNGG	6 cut(s)	89, 98, 182, 306, 403, 613
BstSFI	CTRYAG	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	52, 238
BtsI	GCAGTG	3 cut(s)	714, 726, 781
BtsIMutI	CAGTG	3 cut(s)	714, 726, 781
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	752, 838, 932
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	3 cut(s)	703, 729, 867
CviJI	RGCY	9 cut(s)	142, 161, 258, 296, 427, 574, 689, 871, 904
CviKI_1	RGCY	9 cut(s)	142, 161, 258, 296, 427, 574, 689, 871, 904
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	540, 582, 813
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	80, 768
DpnII	GATC	2 cut(s)	78, 766
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	2 cut(s)	208, 802
Eco47I	GGWCC	3 cut(s)	752, 838, 932
Eco57I	CTGAAG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	89, 403, 613
EcoRV	GATATC	2 cut(s)	208, 802
EcoT22I	ATGCAT	2 cut(s)	447, 708
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
Esp3I	CGTCTC	3 cut(s)	5, 62, 143
FaeI	CATG	3 cut(s)	706, 732, 870
FaqI	GGGAC	4 cut(s)	82, 451, 738, 824
FatI	CATG	3 cut(s)	702, 728, 866
FauI	CCCGC	1 cut(s)	629
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	178, 371
FokI	GGATG	2 cut(s)	39, 245
Fsp4HI	GCNGC	2 cut(s)	178, 371
FspBI	CTAG	2 cut(s)	297, 905
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	178, 371
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	6 cut(s)	62, 100, 131, 183, 308, 554
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	106, 180
Hin1II	CATG	3 cut(s)	706, 732, 870
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	5 cut(s)	502, 523, 544, 550, 565
HpaII	CCGG	6 cut(s)	62, 100, 131, 183, 308, 554
HphI	GGTGA	2 cut(s)	392, 478
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	6 cut(s)	114, 202, 549, 570, 766, 917
Hpy188III	TCNNGA	4 cut(s)	211, 436, 770, 875
Hpy8I	GTNNAC	1 cut(s)	819
Hpy99I	CGWCG	4 cut(s)	19, 108, 130, 776
HpyAV	CCTTC	4 cut(s)	606, 631, 847, 851
HpyCH4III	ACNGT	4 cut(s)	415, 776, 823, 924
HpyCH4IV	ACGT	3 cut(s)	17, 106, 152
HpyCH4V	TGCA	7 cut(s)	136, 156, 325, 445, 608, 706, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	725, 745
HpyF3I	CTNAG	3 cut(s)	540, 582, 813
HpySE526I	ACGT	3 cut(s)	17, 106, 152
Hsp92I	GRCGYC	2 cut(s)	106, 180
Hsp92II	CATG	3 cut(s)	706, 732, 870
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	78, 766
LmnI	GCTCC	2 cut(s)	664, 917
LweI	GCATC	4 cut(s)	223, 334, 463, 634
MaeI	CTAG	2 cut(s)	297, 905
MaeII	ACGT	3 cut(s)	17, 106, 152
MaeIII	GTNAC	3 cut(s)	338, 721, 860
MalI	GATC	2 cut(s)	80, 768
MboI	GATC	2 cut(s)	78, 766
MboII	GAAGA	3 cut(s)	127, 215, 857
MfeI	CAATTG	3 cut(s)	495, 516, 558
MhlI	GDGCHC	1 cut(s)	922
MluCI	AATT	6 cut(s)	73, 344, 384, 495, 516, 558
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	7 cut(s)	58, 205, 208, 621, 689, 841, 945
Mph1103I	ATGCAT	2 cut(s)	447, 708
MslI	CAYNNNNRTG	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	6 cut(s)	62, 100, 131, 183, 308, 554
MspR9I	CCNGG	6 cut(s)	91, 100, 184, 308, 405, 615
MunI	CAATTG	3 cut(s)	495, 516, 558
MvaI	CCWGG	3 cut(s)	91, 405, 615
MwoI	GCNNNNNNNGC	2 cut(s)	725, 745
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	3 cut(s)	100, 184, 308
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	78, 766
NlaIII	CATG	3 cut(s)	706, 732, 870
NlaIV	GGNNCC	4 cut(s)	181, 619, 754, 840
NmuCI	GTSAC	2 cut(s)	338, 721
NsiI	ATGCAT	2 cut(s)	447, 708
NspI	RCATGY	2 cut(s)	706, 732
OliI	CACNNNNGTG	1 cut(s)	719
PfeI	GAWTC	5 cut(s)	502, 523, 544, 550, 565
PflMI	CCANNNNNTGG	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	179, 372
PluTI	GGCGCC	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	89, 403, 613
PspGI	CCWGG	3 cut(s)	89, 403, 613
PspN4I	GGNNCC	4 cut(s)	181, 619, 754, 840
PspPI	GGNCC	3 cut(s)	752, 838, 932
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
RseI	CAYNNNNRTG	1 cut(s)	719
SatI	GCNGC	2 cut(s)	178, 371
Sau3AI	GATC	2 cut(s)	78, 766
Sau96I	GGNCC	3 cut(s)	752, 838, 932
ScrFI	CCNGG	6 cut(s)	91, 100, 184, 308, 405, 615
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	4 cut(s)	223, 334, 463, 634
SfcI	CTRYAG	1 cut(s)	717
SfoI	GGCGCC	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	3 cut(s)	752, 838, 932
SmiMI	CAYNNNNRTG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	73, 344, 384, 495, 516, 558
SsiI	CCGC	5 cut(s)	177, 371, 389, 622, 734
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	297, 905
StyD4I	CCNGG	6 cut(s)	89, 98, 182, 306, 403, 613
TaaI	ACNGT	4 cut(s)	415, 776, 823, 924
TaiI	ACGT	3 cut(s)	20, 109, 155
TaqI	TCGA	2 cut(s)	28, 77
TaqII	GACCGA	1 cut(s)	826
TasI	AATT	6 cut(s)	73, 344, 384, 495, 516, 558
TauI	GCSGC	2 cut(s)	180, 373
TfiI	GAWTC	5 cut(s)	502, 523, 544, 550, 565
TscAI	CASTG	3 cut(s)	721, 726, 788
TseFI	GTSAC	2 cut(s)	338, 721
Tsp45I	GTSAC	2 cut(s)	338, 721
TspDTI	ATGAA	2 cut(s)	41, 383
TspRI	CASTG	3 cut(s)	721, 726, 788
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	752, 838, 932
XapI	RAATTY	2 cut(s)	73, 344
XceI	RCATGY	2 cut(s)	706, 732
XspI	CTAG	2 cut(s)	297, 905
ZraI	GACGTC	1 cut(s)	107
Zsp2I	ATGCAT	2 cut(s)	447, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.