Rh3DG364400

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002785
Physical Location & Seq
Reverse (-)
45441060 .. 45445291
4232 bp
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UTR
Exon/CDS
Intron
Rh3DG364400.1

Sequence Viewer

Length: 633 bp
ATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGGGTAGCGATCGTCATCACAACAAGGTTAATGTTGTTGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAGAAAGTATTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTTTGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCATCATGTGCAGGAATTGTGCAACGTTCTTGATAAATTTAGGCCTGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTCAAAGGCACTCCAAGGGTTAGATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGAAATGACTGTTTTCAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTATCAAGAATTCAGATGCTTCTCAAGGTGAGCCTCTTAATTTCTTATACCTCTGTGTACATGTGAGTGTGGACTATGAAGATGGAATAAGTACCATAAACATTATTGTCACTTGGATTTACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

210

Amino Acids

23.88

Weight (kDa)

9.03

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 86 - 177 1e-30 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 2 cut(s) 266, 514
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 564, 598
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 2 cut(s) 205, 313
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 2 cut(s) 208, 272
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 266, 514
AsuHPI GGTGA 1 cut(s) 545
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 441, 581
BcoDI GTCTC 1 cut(s) 189
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 3 cut(s) 82, 465, 511
BmuI ACTGGG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 513
BsaBI GATNNNNATC 2 cut(s) 45, 479
BsaJI CCNNGG 2 cut(s) 211, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 415, 471
Bse8I GATNNNNATC 2 cut(s) 45, 479
BseDI CCNNGG 2 cut(s) 211, 341
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 2 cut(s) 45, 479
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 415, 471
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 210, 274
BsiEI CGRYCG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 2 cut(s) 210, 274
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 2 cut(s) 40, 502
Bsp1720I GCTNAGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 210, 274
BspCNI CTCAG 1 cut(s) 316
BspPI GGATC 1 cut(s) 497
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 2 cut(s) 415, 471
BssECI CCNNGG 2 cut(s) 211, 341
BssMI GATC 2 cut(s) 40, 502
BssT1I CCWWGG 2 cut(s) 211, 341
Bst4CI ACNGT 1 cut(s) 448
BstAUI TGTACA 1 cut(s) 562
BstDEI CTNAG 2 cut(s) 290, 324
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 2 cut(s) 43, 505
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 40, 502
BstMCI CGRYCG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 210, 274
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 410
Csp6I GTAC 2 cut(s) 563, 597
CviAII CATG 3 cut(s) 80, 236, 566
CviJI RGCY 7 cut(s) 14, 210, 274, 289, 316, 460, 538
CviKI_1 RGCY 7 cut(s) 14, 210, 274, 289, 316, 460, 538
CviQI GTAC 2 cut(s) 563, 597
DdeI CTNAG 2 cut(s) 290, 324
DpnI GATC 2 cut(s) 42, 504
DpnII GATC 2 cut(s) 40, 502
Eco130I CCWWGG 2 cut(s) 211, 341
Eco147I AGGCCT 2 cut(s) 210, 274
Eco57I CTGAAG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 211, 341
ErhI CCWWGG 2 cut(s) 211, 341
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 3 cut(s) 83, 239, 569
FatI CATG 3 cut(s) 79, 235, 565
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 2 cut(s) 210, 274
Hin1II CATG 3 cut(s) 83, 239, 569
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 161, 177
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 563, 577
Hpy188I TCNGA 2 cut(s) 160, 520
Hpy188III TCNNGA 3 cut(s) 260, 437, 511
Hpy8I GTNNAC 2 cut(s) 563, 577
HpyAV CCTTC 2 cut(s) 133, 234
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 198, 255
HpyCH4V TGCA 7 cut(s) 126, 172, 241, 252, 304, 372, 478
HpyF3I CTNAG 2 cut(s) 290, 324
HpySE526I ACGT 2 cut(s) 198, 255
Hsp92II CATG 3 cut(s) 83, 239, 569
Kzo9I GATC 2 cut(s) 40, 502
LpnPI CCDG 8 cut(s) 17, 121, 227, 288, 330, 396, 417, 452
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 3 cut(s) 82, 465, 511
MaeII ACGT 2 cut(s) 198, 255
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 42, 504
MboI GATC 2 cut(s) 40, 502
MboII GAAGA 5 cut(s) 144, 147, 290, 301, 596
MluCI AATT 4 cut(s) 245, 266, 514, 544
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 7 cut(s) 4, 102, 240, 319, 432, 549, 566
MseI TTAA 3 cut(s) 60, 144, 543
MslI CAYNNNNRTG 2 cut(s) 78, 570
Mva1269I GAATGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 490
NdeII GATC 2 cut(s) 40, 502
NlaIII CATG 3 cut(s) 83, 239, 569
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 1 cut(s) 569
PceI AGGCCT 2 cut(s) 210, 274
PciI ACATGT 1 cut(s) 565
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 1 cut(s) 128
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PscI ACATGT 1 cut(s) 565
Psp1406I AACGTT 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 410
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 2 cut(s) 564, 598
RsaNI GTAC 2 cut(s) 563, 597
RseI CAYNNNNRTG 2 cut(s) 78, 570
SaqAI TTAA 3 cut(s) 60, 144, 543
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 40, 502
SchI GAGTC 1 cut(s) 171
SetI ASST 9 cut(s) 60, 105, 144, 201, 258, 330, 462, 535, 558
SfaNI GCATC 3 cut(s) 82, 465, 511
SmiMI CAYNNNNRTG 2 cut(s) 78, 570
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 245, 266, 514, 544
SseBI AGGCCT 2 cut(s) 210, 274
StuI AGGCCT 2 cut(s) 210, 274
StyI CCWWGG 2 cut(s) 211, 341
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 201, 258
TasI AATT 4 cut(s) 245, 266, 514, 544
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 60, 144, 543
Tru9I TTAA 3 cut(s) 60, 144, 543
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 2 cut(s) 107, 597
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 2 cut(s) 266, 514
XceI RCATGY 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.