Rh3AG328200

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002785
Physical Location & Seq
Reverse (-)
46685337 .. 46688543
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG328200.1

Sequence Viewer

Length: 744 bp
ATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGGGTGGCGATCGTCATCACAACAAGGTTAATGTTGTTGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAGAAAGTATTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTTTGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCACCGTGTGCAGGAATTGTGCAACGTTCTTGATAAATTTAGGCCTGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTGAAAGGCACTCCAAGGGTTACATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGGAATGACTGTTTTCAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTATCAAGAATTCAGATGCTTCTCAAGTGAGATTGGCAAAGTTGAAAGCTGATAGCGTATTCACTGCCCCTTGCAAAACATCAGTACTATATCCAACAACAGGTGGCAATATCCACGCCTTCACCGCCATAACTCCTTGTGCGGTGCTTGATGTGATCGGGCCCCCCTATTCTAAAGAAGATGGCCGGGACTGCTCATATTACAAAGATCATCCCTATGCTTCGTATTCTGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

247

Amino Acids

27.44

Weight (kDa)

9.27

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 86 - 243 6.1e-64 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AciI CCGC 2 cut(s) 630, 647
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 2 cut(s) 266, 514
AcuI CTGAAG 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 3 cut(s) 241, 410, 605
AgsI TTSAA 3 cut(s) 205, 313, 550
AluBI AGCT 2 cut(s) 460, 554
AluI AGCT 2 cut(s) 460, 554
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 4 cut(s) 208, 272, 665, 688
ApaI GGGCCC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 266, 514
AspS9I GGNCC 2 cut(s) 665, 666
AsuC2I CCSGG 2 cut(s) 438, 692
AsuHPI GGTGA 3 cut(s) 224, 340, 619
BaeGI GKGCMC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 441, 680
BcnI CCSGG 2 cut(s) 438, 692
BcoDI GTCTC 1 cut(s) 189
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 591
Bme1390I CCNGG 2 cut(s) 438, 692
BmgT120I GGNCC 2 cut(s) 665, 666
BmiI GGNNCC 2 cut(s) 667, 668
BmrFI CCNGG 2 cut(s) 438, 692
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 3 cut(s) 82, 465, 511
BmuI ACTGGG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 438, 692
BsaBI GATNNNNATC 2 cut(s) 45, 479
BsaJI CCNNGG 2 cut(s) 211, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 410, 605
Bse1I ACTGG 2 cut(s) 415, 471
Bse8I GATNNNNATC 2 cut(s) 45, 479
BseDI CCNNGG 2 cut(s) 211, 341
BseGI GGATG 2 cut(s) 433, 715
BseJI GATNNNNATC 2 cut(s) 45, 479
BseLI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 415, 471
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 210, 274, 667, 690
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 438, 691
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 241, 410, 605
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 4 cut(s) 210, 274, 667, 690
Bsp120I GGGCCC 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 40, 502, 660, 712
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 2 cut(s) 630, 647
BspANI GGCC 4 cut(s) 210, 274, 667, 690
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 667, 668
BspPI GGATC 1 cut(s) 497
BsrI ACTGG 2 cut(s) 415, 471
BssECI CCNNGG 2 cut(s) 211, 341
BssMI GATC 4 cut(s) 40, 502, 660, 712
BssT1I CCWWGG 2 cut(s) 211, 341
Bst4CI ACNGT 2 cut(s) 236, 448
BstDEI CTNAG 2 cut(s) 290, 324
BstF5I GGATG 2 cut(s) 433, 715
BstKTI GATC 4 cut(s) 43, 505, 663, 715
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 40, 502, 660, 712
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 629, 696
BstSCI CCNGG 2 cut(s) 436, 690
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 4 cut(s) 210, 274, 667, 690
BtsCI GGATG 2 cut(s) 433, 715
BtsI GCAGTG 2 cut(s) 301, 567
BtsIMutI CAGTG 2 cut(s) 301, 567
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 665, 666
Csp6I GTAC 1 cut(s) 590
CviAII CATG 1 cut(s) 80
CviJI RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviKI_1 RGCY 9 cut(s) 14, 210, 274, 289, 316, 460, 554, 667, 690
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 2 cut(s) 290, 324
DpnI GATC 4 cut(s) 42, 504, 662, 714
DpnII GATC 4 cut(s) 40, 502, 660, 712
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 688
Eco130I CCWWGG 2 cut(s) 211, 341
Eco147I AGGCCT 2 cut(s) 210, 274
Eco24I GRGCYC 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 211, 341
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 211, 341
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 83
FaqI GGGAC 1 cut(s) 707
FatI CATG 1 cut(s) 79
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 420, 702
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 4 cut(s) 210, 274, 667, 690
HapII CCGG 2 cut(s) 438, 691
Hin1II CATG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 161, 177
HpaII CCGG 2 cut(s) 438, 691
HphI GGTGA 3 cut(s) 224, 340, 619
Hpy188I TCNGA 2 cut(s) 160, 520
Hpy188III TCNNGA 2 cut(s) 260, 511
HpyAV CCTTC 3 cut(s) 133, 234, 634
HpyCH4III ACNGT 2 cut(s) 236, 448
HpyCH4IV ACGT 2 cut(s) 198, 255
HpyCH4V TGCA 8 cut(s) 126, 172, 241, 252, 304, 372, 478, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 696
HpyF3I CTNAG 2 cut(s) 290, 324
HpySE526I ACGT 2 cut(s) 198, 255
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 4 cut(s) 40, 502, 660, 712
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 3 cut(s) 82, 465, 511
MaeII ACGT 2 cut(s) 198, 255
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 42, 504, 662, 714
MboI GATC 4 cut(s) 40, 502, 660, 712
MboII GAAGA 5 cut(s) 144, 147, 290, 301, 695
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 4 cut(s) 245, 266, 514, 739
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 5 cut(s) 4, 102, 240, 319, 432
MseI TTAA 3 cut(s) 60, 144, 742
MslI CAYNNNNRTG 2 cut(s) 78, 720
MspI CCGG 2 cut(s) 438, 691
MspR9I CCNGG 2 cut(s) 438, 692
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 629, 696
NciI CCSGG 2 cut(s) 438, 692
NdeI CATATG 1 cut(s) 490
NdeII GATC 4 cut(s) 40, 502, 660, 712
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 667, 668
PceI AGGCCT 2 cut(s) 210, 274
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 1 cut(s) 128
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 667, 668
PspOMI GGGCCC 1 cut(s) 665
PspPI GGNCC 2 cut(s) 665, 666
PstNI CAGNNNCTG 1 cut(s) 410
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
RseI CAYNNNNRTG 2 cut(s) 78, 720
SaqAI TTAA 3 cut(s) 60, 144, 742
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 4 cut(s) 40, 502, 660, 712
Sau96I GGNCC 2 cut(s) 665, 666
ScaI AGTACT 1 cut(s) 591
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 438, 692
SduI GDGCHC 1 cut(s) 669
SetI ASST 9 cut(s) 60, 105, 144, 201, 258, 330, 462, 556, 610
SfaNI GCATC 3 cut(s) 82, 465, 511
SmiMI CAYNNNNRTG 2 cut(s) 78, 720
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 245, 266, 514, 739
SseBI AGGCCT 2 cut(s) 210, 274
SsiI CCGC 2 cut(s) 630, 647
StuI AGGCCT 2 cut(s) 210, 274
StyD4I CCNGG 2 cut(s) 436, 690
StyI CCWWGG 2 cut(s) 211, 341
TaaI ACNGT 2 cut(s) 236, 448
TaiI ACGT 2 cut(s) 201, 258
TasI AATT 4 cut(s) 245, 266, 514, 739
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 60, 144, 742
Tru9I TTAA 3 cut(s) 60, 144, 742
TscAI CASTG 2 cut(s) 301, 574
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 301, 574
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 2 cut(s) 266, 514
ZrmI AGTACT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.