Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

5337181 .. 5340039

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGGGTTGAGACGACGTTGCCCAATCGAAAGGACAACAACAAGGTGCTTCATCCATCGCCGGAGGAGACGAATTCGATCAGCAAGTCCAGGAAGTCCCGGCGACGTCATCGGAAGATGTCGCCGTCGCCGGTGCAGAAGCTATACGAGACGTGCAAGGCTGTGTTTTCCTTGTGCGGCGCCGGGATTATTCCCTGCTCCGAAGATATCCAGAAGCTATGCTCTGTTTTGGGTACGTATTTTCTTATATTGCATGATGATTCACTGGTCTCATCAAGTGTTGTCTGCATTCCATCTGAGAAAGCACTTGGCATTCATAGCACCATGAGGTTGCTGGGACATTATGCTATGAGACCTGTTGATGTTGGCCTGTCTTGTGTAATTCCGCTTCATAATCACCCAGGAATGACGGTTTTCAGTAAGCTTCTTTTTGGGACAATGCATATCAAGTCATATGACTGGGTGATTGATGCCCCTCAGAAAACACCAACAATTGAGATTCAGCAACTGACAACTGAGAATCAGAAGCCAACACCTGAGAATCCTATTCCTTCCCAAGTTAATGCAGTTGCACCTCCTGCTACCCGCTTGGCAAAAGTGAAGGTTGACGCTGACTTTACTGCTCCTTGCGACACTAAAATCCTTTATCCAGCTGATGGAGGCAACATGCATTGCTTCACTGCAGTGACGGCATGTGCGTTCACAGTTGATGGAGTATCGGTCCCTGAAGAGGAGAAGGAAGGTTACGCATGGCTTCAAGAGATTGAGAAACAGAAACCAGACGAGCTAGATGTAGTCGGAGCACGGTATAGTGGTCCTCAAATACAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

278

Amino Acids

30.61

Weight (kDa)

6.75

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	125 - 234	1.9e-31	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	656
AciI	CCGC	3 cut(s)	177, 386, 586
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	2 cut(s)	106, 180
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	656, 730
AgsI	TTSAA	1 cut(s)	758
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	2 cut(s)	89, 400
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	5 cut(s)	142, 217, 424, 653, 787
AluI	AGCT	5 cut(s)	142, 217, 424, 653, 787
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	5 cut(s)	5, 62, 143, 274, 346
AlwNI	CAGNNNCTG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	721, 815
AsuC2I	CCSGG	2 cut(s)	100, 184
AsuHPI	GGTGA	2 cut(s)	389, 475
AvaII	GGWCC	2 cut(s)	721, 815
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	4 cut(s)	372, 404, 728, 760
Bbv12I	GWGCWC	1 cut(s)	805
BccI	CCATC	4 cut(s)	64, 301, 650, 704
BceAI	ACGGC	2 cut(s)	109, 705
BciT130I	CCWGG	2 cut(s)	91, 402
BcnI	CCSGG	2 cut(s)	100, 184
BcoDI	GTCTC	5 cut(s)	5, 62, 143, 274, 346
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	91, 100, 184, 402
Bme18I	GGWCC	2 cut(s)	721, 815
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	721, 815
BmiI	GGNNCC	2 cut(s)	181, 723
BmrFI	CCNGG	4 cut(s)	91, 100, 184, 402
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	469
BpuMI	CCSGG	2 cut(s)	100, 184
BsaAI	YACGTR	1 cut(s)	237
BsaHI	GRCGYC	2 cut(s)	106, 180
BsaI	GGTCTC	2 cut(s)	274, 346
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 730
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	270, 464
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	91, 402
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	656, 730
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	4 cut(s)	288, 491, 507, 528
BseNI	ACTGG	2 cut(s)	270, 464
BseRI	GAGGAG	2 cut(s)	80, 746
BseYI	CCCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	805
BsiSI	CCGG	4 cut(s)	62, 100, 131, 183
BslFI	GGGAC	4 cut(s)	82, 351, 448, 707
BslI	CCNNNNNNNGG	2 cut(s)	656, 730
BsmAI	GTCTC	5 cut(s)	5, 62, 143, 274, 346
BsmBI	CGTCTC	3 cut(s)	5, 62, 143
BsmFI	GGGAC	4 cut(s)	82, 351, 448, 707
BsmI	GAATGC	2 cut(s)	288, 312
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	2 cut(s)	274, 346
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	177, 386, 586
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	4 cut(s)	289, 490, 508, 529
BspLI	GGNNCC	2 cut(s)	181, 723
BspMAI	CTGCAG	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	2 cut(s)	274, 346
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	270, 464
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	2 cut(s)	106, 180
Bst2UI	CCWGG	2 cut(s)	91, 402
Bst4CI	ACNGT	3 cut(s)	412, 706, 807
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	2 cut(s)	106, 180
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	297, 477, 516, 537
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	5 cut(s)	5, 62, 143, 274, 346
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 578, 689
BstNI	CCWGG	2 cut(s)	91, 402
BstNSI	RCATGY	2 cut(s)	670, 696
BstSCI	CCNGG	4 cut(s)	89, 98, 182, 400
BstSFI	CTRYAG	1 cut(s)	681
BstSNI	TACGTA	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	2 cut(s)	678, 690
BtsIMutI	CAGTG	3 cut(s)	263, 678, 690
CaiI	CAGNNNCTG	1 cut(s)	508
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	721, 815
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	254, 325, 667, 693, 750
CviJI	RGCY	9 cut(s)	142, 161, 217, 369, 424, 529, 653, 754, 787
CviKI_1	RGCY	9 cut(s)	142, 161, 217, 369, 424, 529, 653, 754, 787
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	4 cut(s)	297, 477, 516, 537
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco105I	TACGTA	1 cut(s)	237
Eco31I	GGTCTC	2 cut(s)	274, 346
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	721, 815
Eco57I	CTGAAG	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	89, 400
EcoRV	GATATC	1 cut(s)	208
EcoT22I	ATGCAT	2 cut(s)	444, 672
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
Esp3I	CGTCTC	3 cut(s)	5, 62, 143
FaeI	CATG	5 cut(s)	257, 328, 670, 696, 753
FaqI	GGGAC	4 cut(s)	82, 351, 448, 707
FatI	CATG	5 cut(s)	253, 324, 666, 692, 749
FauI	CCCGC	1 cut(s)	593
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	4 cut(s)	62, 100, 131, 183
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	106, 180
Hin1II	CATG	5 cut(s)	257, 328, 670, 696, 753
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	260, 499, 520, 541
HpaII	CCGG	4 cut(s)	62, 100, 131, 183
HphI	GGTGA	2 cut(s)	389, 475
Hpy166II	GTNNAC	2 cut(s)	607, 702
Hpy188I	TCNGA	6 cut(s)	114, 202, 298, 480, 525, 800
Hpy188III	TCNNGA	2 cut(s)	211, 758
Hpy8I	GTNNAC	2 cut(s)	607, 702
Hpy99I	CGWCG	3 cut(s)	19, 108, 130
HpyAV	CCTTC	4 cut(s)	561, 595, 730, 734
HpyCH4III	ACNGT	3 cut(s)	412, 706, 807
HpyCH4IV	ACGT	4 cut(s)	17, 106, 152, 236
HpyCH4V	TGCA	9 cut(s)	136, 156, 253, 288, 442, 566, 572, 670, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 578, 689
HpyF3I	CTNAG	4 cut(s)	297, 477, 516, 537
HpySE526I	ACGT	4 cut(s)	17, 106, 152, 236
Hsp92I	GRCGYC	2 cut(s)	106, 180
Hsp92II	CATG	5 cut(s)	257, 328, 670, 696, 753
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	203, 628, 800
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	4 cut(s)	17, 106, 152, 236
MaeIII	GTNAC	2 cut(s)	685, 743
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	127, 215, 740
MfeI	CAATTG	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	3 cut(s)	73, 381, 492
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	7 cut(s)	58, 321, 486, 585, 653, 724, 828
Mph1103I	ATGCAT	2 cut(s)	444, 672
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	4 cut(s)	62, 100, 131, 183
MspR9I	CCNGG	4 cut(s)	91, 100, 184, 402
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	288, 312
MvaI	CCWGG	2 cut(s)	91, 402
MwoI	GCNNNNNNNGC	3 cut(s)	318, 578, 689
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	100, 184
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	5 cut(s)	257, 328, 670, 696, 753
NlaIV	GGNNCC	2 cut(s)	181, 723
NmuCI	GTSAC	1 cut(s)	685
NsiI	ATGCAT	2 cut(s)	444, 672
NspI	RCATGY	2 cut(s)	670, 696
OliI	CACNNNNGTG	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	695
PctI	GAATGC	2 cut(s)	288, 312
PfeI	GAWTC	4 cut(s)	260, 499, 520, 541
PflMI	CCANNNNNTGG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	89, 400
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	2 cut(s)	89, 400
PspN4I	GGNNCC	2 cut(s)	181, 723
PspPI	GGNCC	2 cut(s)	721, 815
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	721, 815
ScrFI	CCNGG	4 cut(s)	91, 100, 184, 402
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	681
SfoI	GGCGCC	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	2 cut(s)	721, 815
SmiMI	CAYNNNNRTG	1 cut(s)	683
SnaBI	TACGTA	1 cut(s)	237
Sse9I	AATT	3 cut(s)	73, 381, 492
SsiI	CCGC	3 cut(s)	177, 386, 586
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	4 cut(s)	89, 98, 182, 400
TaaI	ACNGT	3 cut(s)	412, 706, 807
TaiI	ACGT	4 cut(s)	20, 109, 155, 239
TaqI	TCGA	2 cut(s)	28, 77
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	3 cut(s)	73, 381, 492
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	260, 499, 520, 541
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	270, 685, 690
TseFI	GTSAC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	41, 305, 380
TspRI	CASTG	3 cut(s)	270, 685, 690
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	721, 815
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	670, 696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XspI	CTAG	1 cut(s)	788
ZraI	GACGTC	1 cut(s)	107
Zsp2I	ATGCAT	2 cut(s)	444, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.