Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

76636374 .. 76639840

Gene Structure 3467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG589400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCAGATGGGGATATTCTGTTTGCCGCCGTCAGGTGTAATTCCGCTTCATAATCACCCAGGAATGACGGTTTTCAGTAAACTTCTTTTCGGGACAATGCATATCAAGTCATATGACTGGGTGGTTGATGCCCCTGAGAAAACACCAACAATTGAGAATCAGCAACCGACAACTGAGAATCAGAATCCAGCAATTGAGAATCAGAAGCCAACACCTGAGAATCCTATTCCTTCCCAAGTTAATGCAGTTGCTCCTCCTGCTGCCCGCTTGGCAAAAGTGAAGGTTGATGCCGACTTTACTGCTCCTTGTGACACTAAAATCCTTTATCCAGCTGATGGAGGCAACATGCATTGCTTCACTGCAGTGACAGCATGTGCGGTGCTTGATGTGCTTGGTCCCCCATATTGTGATCCCGACGGCCGCCACTGCCAATACTACCTTGATAGCCCATTTTCTCAGTTCACAGTTGATGGAGTATCGGTCCCTGAAGAGGAGAAGGAAGGTTACGCATGGCTTCAAGAGATTGAGAAACCAGACGAGCTAGCCTTTGTCGGAGCGTTGTATAGTGGCCCTCAAATACAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

196

Amino Acids

21.46

Weight (kDa)

4.52

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	2 - 193	1.6e-61	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	5 cut(s)	26, 44, 265, 377, 421
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	32, 335, 490
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	2 cut(s)	332, 541
AluI	AGCT	2 cut(s)	332, 541
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	418, 568
ApeKI	GCWGC	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	395, 481, 569
AsuHPI	GGTGA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	2 cut(s)	395, 481
BarI	GAAGNNNNNNTAC	4 cut(s)	30, 62, 488, 520
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	329, 464
BceAI	ACGGC	2 cut(s)	13, 433
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	26, 261, 421
BlsI	GCNGC	3 cut(s)	27, 262, 422
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	395, 481
BmgT120I	GGNCC	3 cut(s)	395, 481, 569
BmiI	GGNNCC	2 cut(s)	397, 483
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	118, 277
BmtI	GCTAGC	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 335, 490
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	32, 335, 490
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	4 cut(s)	126, 165, 207, 470
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	243, 506
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	420, 570
BsiEI	CGRYCG	1 cut(s)	421
BslFI	GGGAC	3 cut(s)	106, 381, 467
BslI	CCNNNNNNNGG	3 cut(s)	32, 335, 490
BsmFI	GGGAC	3 cut(s)	106, 381, 467
BsnI	GGCC	2 cut(s)	420, 570
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	5 cut(s)	26, 44, 265, 377, 421
BspANI	GGCC	2 cut(s)	420, 570
BspCNI	CTCAG	4 cut(s)	127, 166, 208, 469
BspLI	GGNNCC	2 cut(s)	397, 483
BspMAI	CTGCAG	1 cut(s)	364
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	70, 466
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	265, 543
BstDEI	CTNAG	4 cut(s)	135, 174, 216, 456
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 269, 368, 388, 426
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	349, 375
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	420, 570
BtsI	GCAGTG	3 cut(s)	357, 369, 424
BtsIMutI	CAGTG	3 cut(s)	357, 369, 424
Cac8I	GCNNGC	2 cut(s)	265, 543
Cfr13I	GGNCC	3 cut(s)	395, 481, 569
CviAII	CATG	3 cut(s)	346, 372, 510
CviJI	RGCY	8 cut(s)	208, 332, 420, 447, 514, 541, 545, 570
CviKI_1	RGCY	8 cut(s)	208, 332, 420, 447, 514, 541, 545, 570
DdeI	CTNAG	4 cut(s)	135, 174, 216, 456
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	418
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EclXI	CGGCCG	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	395, 481
Eco52I	CGGCCG	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	58
EcoT22I	ATGCAT	2 cut(s)	102, 351
FaeI	CATG	3 cut(s)	349, 375, 513
FaiI	YATR	9 cut(s)	51, 102, 112, 114, 347, 373, 403, 511, 564
FaqI	GGGAC	3 cut(s)	106, 381, 467
FatI	CATG	3 cut(s)	345, 371, 509
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	26, 261, 421
Fsp4HI	GCNGC	3 cut(s)	26, 261, 421
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	3 cut(s)	26, 261, 421
HaeIII	GGCC	2 cut(s)	420, 570
Hin1II	CATG	3 cut(s)	349, 375, 513
HinfI	GANTC	5 cut(s)	157, 178, 184, 199, 220
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	80, 462
Hpy188I	TCNGA	3 cut(s)	183, 204, 554
Hpy188III	TCNNGA	3 cut(s)	91, 413, 518
Hpy8I	GTNNAC	2 cut(s)	80, 462
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	4 cut(s)	240, 274, 490, 494
HpyCH4III	ACNGT	2 cut(s)	70, 466
HpyCH4V	TGCA	5 cut(s)	4, 100, 245, 349, 362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 269, 368, 388, 426
HpyF3I	CTNAG	4 cut(s)	135, 174, 216, 456
Hsp92II	CATG	3 cut(s)	349, 375, 513
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	3 cut(s)	256, 307, 554
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	118, 277
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	308, 364, 503
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	1 cut(s)	500
MfeI	CAATTG	2 cut(s)	150, 192
MluCI	AATT	4 cut(s)	39, 150, 192, 586
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	264, 332, 484, 582
Mph1103I	ATGCAT	2 cut(s)	102, 351
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	2 cut(s)	150, 192
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	5 cut(s)	257, 269, 368, 388, 426
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	409
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	349, 375, 513
NlaIV	GGNNCC	2 cut(s)	397, 483
NmuCI	GTSAC	2 cut(s)	308, 364
NsiI	ATGCAT	2 cut(s)	102, 351
NspI	RCATGY	2 cut(s)	349, 375
OliI	CACNNNNGTG	1 cut(s)	362
PfeI	GAWTC	5 cut(s)	157, 178, 184, 199, 220
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	27, 262, 422
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	397, 483
PspPI	GGNCC	3 cut(s)	395, 481, 569
PstI	CTGCAG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	26, 261, 421
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	3 cut(s)	395, 481, 569
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	7 cut(s)	37, 217, 285, 334, 441, 505, 543
SfaNI	GCATC	2 cut(s)	118, 277
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	395, 481
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	39, 150, 192, 586
SsiI	CCGC	5 cut(s)	26, 44, 265, 377, 421
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	70, 466
TaqII	GACCGA	1 cut(s)	469
TasI	AATT	4 cut(s)	39, 150, 192, 586
TauI	GCSGC	2 cut(s)	28, 423
TfiI	GAWTC	5 cut(s)	157, 178, 184, 199, 220
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	3 cut(s)	364, 369, 431
TseFI	GTSAC	2 cut(s)	308, 364
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	308, 364
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	364, 369, 431
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	395, 481
XceI	RCATGY	2 cut(s)	349, 375
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	2 cut(s)	102, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.