Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

83509859 .. 83514067

Gene Structure 4209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG607800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGGGTTGAGACGACGTTGCCCAATCGAAAAGACAACAACAAGGTGCTTCATCCGTCGCCGGAGGAGACGAATTCGATCAGCAAGTCCAGGAAGTCCCGGCGGCGTCATCGGAAGATGTCGCCGGTGCAGAAGCTATACGAGACGTGCAAGGCTGTGTTTTCCTTGTGTGGCGCCGGGATTATTCCCTCCTCCGAAGATATCCAGAAGCTATGCTCTGTTTTGGATGCTATCAGACCTGTTGATGTTGGCCTGACTCCTGAGTTGCCATACGAAAGACTTACAACAGCTAGGCGAACCCCGCCAATCACATACTTGCATCTGTTTGAGTGCGACAAATTTTCAATGGGGATATTCTGTTTGCCGCCGTCAGGTGTAATTCCGCTTCATAATCACCCGGGAATGACGGTTTTCAGTAAGCTTCTTTTCGGGACAATGCATATCAAGTCATATGACTGGGTGGTTGATGCCCCTGAGAAAACACCAACAATTGAGAATCAGCAACCGACAATTGGGATTCAGCAACCGACAACTGAGAATCAGAATCCAGCAATTGAGAATCAGAAGCCAACACCTGAGAATCCTATTCCTTCCCAAGTTAATGCAGTTGCACCTCCTGCTACCCGCTTGGCAAAAGTGAAGGTTGATGCCGACTTTACTGCTCCTTGCGACACTAAAATCCTTTATCCAGCTGATGGAGGCAACATGCATTGCTTCACTGCAGTGACAGCATGTGCGGTGCTTGATGTGCTTGGTCCCCCATATTGTGATCCCGACGGCCGCCACTGCCAATACTACCTTGATATCCCATTTTCTCAGTTCACAGGTACCAAATTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

8.0

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	74 - 276	3e-64	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	173, 827
AccB7I	CCANNNNNTGG	1 cut(s)	695
AciI	CCGC	7 cut(s)	103, 302, 365, 383, 625, 737, 781
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	3 cut(s)	73, 338, 833
AcyI	GRCGYC	2 cut(s)	106, 174
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	3 cut(s)	371, 512, 695
AgsI	TTSAA	1 cut(s)	345
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	5 cut(s)	136, 211, 290, 421, 692
AluI	AGCT	5 cut(s)	136, 211, 290, 421, 692
Alw26I	GTCTC	3 cut(s)	5, 62, 137
AlwI	GGATC	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	250, 778
ApoI	RAATTY	3 cut(s)	73, 338, 833
Asp718I	GGTACC	1 cut(s)	827
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	755
AsuC2I	CCSGG	4 cut(s)	100, 178, 398, 399
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	755
BanI	GGYRCC	2 cut(s)	173, 827
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	352, 793
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	4 cut(s)	100, 178, 398, 399
BcoDI	GTCTC	3 cut(s)	5, 62, 137
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	3 cut(s)	104, 365, 781
BlsI	GCNGC	3 cut(s)	105, 366, 782
Bme1390I	CCNGG	5 cut(s)	91, 100, 178, 398, 399
Bme18I	GGWCC	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	175, 757, 829
BmrFI	CCNGG	5 cut(s)	91, 100, 178, 398, 399
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	4 cut(s)	217, 328, 457, 637
BmuI	ACTGGG	1 cut(s)	466
BpuMI	CCSGG	4 cut(s)	100, 178, 398, 399
BsaHI	GRCGYC	2 cut(s)	106, 174
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 512, 695
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	52, 232
BseLI	CCNNNNNNNGG	3 cut(s)	371, 512, 695
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	5 cut(s)	252, 465, 525, 567, 830
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	80, 181
BseX3I	CGGCCG	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	2 cut(s)	252, 780
BshNI	GGYRCC	2 cut(s)	173, 827
BsiEI	CGRYCG	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	5 cut(s)	62, 100, 125, 177, 398
BslFI	GGGAC	3 cut(s)	82, 445, 741
BslI	CCNNNNNNNGG	3 cut(s)	371, 512, 695
BsmAI	GTCTC	3 cut(s)	5, 62, 137
BsmBI	CGTCTC	3 cut(s)	5, 62, 137
BsmFI	GGGAC	3 cut(s)	82, 445, 741
BsnI	GGCC	2 cut(s)	252, 780
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	78, 769
BspACI	CCGC	7 cut(s)	103, 302, 365, 383, 625, 737, 781
BspANI	GGCC	2 cut(s)	252, 780
BspCNI	CTCAG	5 cut(s)	253, 466, 526, 568, 829
BspLI	GGNNCC	3 cut(s)	175, 757, 829
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	1 cut(s)	764
BspT107I	GGYRCC	2 cut(s)	173, 827
BsrDI	GCAATG	1 cut(s)	709
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	78, 769
BssNI	GRCGYC	2 cut(s)	106, 174
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	409
BstACI	GRCGYC	2 cut(s)	106, 174
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDEI	CTNAG	5 cut(s)	261, 474, 534, 576, 816
BstF5I	GGATG	2 cut(s)	52, 232
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	81, 772
BstMAI	GTCTC	3 cut(s)	5, 62, 137
BstMBI	GATC	2 cut(s)	78, 769
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 617, 728, 748, 786
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	709, 735
BstSCI	CCNGG	5 cut(s)	89, 98, 176, 396, 397
BstSFI	CTRYAG	1 cut(s)	720
BstZI	CGGCCG	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	252, 780
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	52, 232
BtsI	GCAGTG	3 cut(s)	717, 729, 784
BtsIMutI	CAGTG	3 cut(s)	717, 729, 784
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	755
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	828
CviAII	CATG	2 cut(s)	706, 732
CviJI	RGCY	9 cut(s)	136, 155, 211, 252, 290, 421, 568, 692, 780
CviKI_1	RGCY	9 cut(s)	136, 155, 211, 252, 290, 421, 568, 692, 780
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	5 cut(s)	261, 474, 534, 576, 816
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	2 cut(s)	80, 771
DpnII	GATC	2 cut(s)	78, 769
EaeI	YGGCCR	1 cut(s)	778
EagI	CGGCCG	1 cut(s)	778
EclXI	CGGCCG	1 cut(s)	778
Eco32I	GATATC	2 cut(s)	202, 805
Eco47I	GGWCC	1 cut(s)	755
Eco52I	CGGCCG	1 cut(s)	778
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	2 cut(s)	202, 805
EcoT22I	ATGCAT	2 cut(s)	441, 711
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
Esp3I	CGTCTC	3 cut(s)	5, 62, 137
FaeI	CATG	2 cut(s)	709, 735
FaqI	GGGAC	3 cut(s)	82, 445, 741
FatI	CATG	2 cut(s)	705, 731
FauI	CCCGC	2 cut(s)	309, 632
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	104, 365, 781
FokI	GGATG	2 cut(s)	39, 239
Fsp4HI	GCNGC	3 cut(s)	104, 365, 781
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	104, 365, 781
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	252, 780
HapII	CCGG	5 cut(s)	62, 100, 125, 177, 398
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	106, 174
Hin1II	CATG	2 cut(s)	709, 735
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	7 cut(s)	256, 496, 517, 538, 544, 559, 580
HpaII	CCGG	5 cut(s)	62, 100, 125, 177, 398
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	5 cut(s)	114, 196, 236, 543, 564
Hpy188III	TCNNGA	4 cut(s)	205, 260, 430, 773
Hpy8I	GTNNAC	1 cut(s)	822
Hpy99I	CGWCG	3 cut(s)	19, 61, 779
HpyAV	CCTTC	2 cut(s)	600, 634
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	2 cut(s)	17, 146
HpyCH4V	TGCA	8 cut(s)	130, 150, 319, 439, 605, 611, 709, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 617, 728, 748, 786
HpyF3I	CTNAG	5 cut(s)	261, 474, 534, 576, 816
HpySE526I	ACGT	2 cut(s)	17, 146
Hsp92I	GRCGYC	2 cut(s)	106, 174
Hsp92II	CATG	2 cut(s)	709, 735
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
KpnI	GGTACC	1 cut(s)	831
Kzo9I	GATC	2 cut(s)	78, 769
LmnI	GCTCC	1 cut(s)	667
LweI	GCATC	4 cut(s)	217, 328, 457, 637
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	17, 146
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	2 cut(s)	80, 771
MboI	GATC	2 cut(s)	78, 769
MboII	GAAGA	2 cut(s)	127, 209
MfeI	CAATTG	3 cut(s)	489, 510, 552
MluCI	AATT	7 cut(s)	73, 338, 378, 489, 510, 552, 833
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	58, 199, 202, 624, 692
Mph1103I	ATGCAT	2 cut(s)	441, 711
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	5 cut(s)	62, 100, 125, 177, 398
MspR9I	CCNGG	5 cut(s)	91, 100, 178, 398, 399
MunI	CAATTG	3 cut(s)	489, 510, 552
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	301, 617, 728, 748, 786
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	4 cut(s)	100, 178, 398, 399
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	78, 769
NlaIII	CATG	2 cut(s)	709, 735
NlaIV	GGNNCC	3 cut(s)	175, 757, 829
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	2 cut(s)	441, 711
NspI	RCATGY	2 cut(s)	709, 735
OliI	CACNNNNGTG	1 cut(s)	722
PfeI	GAWTC	6 cut(s)	496, 517, 538, 544, 559, 580
PflMI	CCANNNNNTGG	1 cut(s)	695
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	105, 366, 782
PleI	GAGTC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	175, 757, 829
PspPI	GGNCC	1 cut(s)	755
PstI	CTGCAG	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	3 cut(s)	104, 365, 781
Sau3AI	GATC	2 cut(s)	78, 769
Sau96I	GGNCC	1 cut(s)	755
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	5 cut(s)	91, 100, 178, 398, 399
SfaNI	GCATC	4 cut(s)	217, 328, 457, 637
SfcI	CTRYAG	1 cut(s)	720
SfoI	GGCGCC	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	755
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	722
Sse9I	AATT	7 cut(s)	73, 338, 378, 489, 510, 552, 833
SsiI	CCGC	7 cut(s)	103, 302, 365, 383, 625, 737, 781
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	5 cut(s)	89, 98, 176, 396, 397
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	2 cut(s)	20, 149
TaqI	TCGA	2 cut(s)	28, 77
TasI	AATT	7 cut(s)	73, 338, 378, 489, 510, 552, 833
TauI	GCSGC	3 cut(s)	106, 367, 783
TfiI	GAWTC	6 cut(s)	496, 517, 538, 544, 559, 580
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	3 cut(s)	724, 729, 791
TseFI	GTSAC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	41, 377
TspGWI	ACGGA	1 cut(s)	45
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	3 cut(s)	724, 729, 791
Van91I	CCANNNNNTGG	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	3 cut(s)	73, 338, 833
XceI	RCATGY	2 cut(s)	709, 735
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	2 cut(s)	441, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.