Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

134753 .. 137267

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgggggttgagacgacgttgcccaaccgaaaagacaacaacaaggtgcttcatccatcgccggaggagacgaattcgatcagcaagtccaggaagtcccggcggcgtcatcggaagatgtcgccggtgcagaagctatacgagacgtgtaaggctgtgttttccttgtgcggcgccgggattattccctcctccgaagatatccagaagctatgctctgttttagatgctatgagacctgttgattttggcctgagtcctgagttgccatacgaaagacttacaacagctgggcgaaccccgccaatcacatacttgcatctgtttgagtgtgacaaattttcaatggggatattctgtttgccaccgtcaggtgtaattccgcttcataatcacccgggaatgacggttttcagtaagcttcttttcgggacaatgcatatcaagtcatatgactgggtggttgatgcccctgagaaaacaccaacaattgagaatcagcaaccgacaactgagaatcagaatccagcaattgagaatcagaagccaacacctgagaatcctattccttcccaagttaatgcagttgcacctcctgctacccgcttggcaaaagtgaaggttgatgccgactttactgctccttgcgacactaaaatcctttatccagctgatggaggcaacatgcattgcttcactgcagtgacagcatgtgcggtgcttgatgtgcttggtcccccatattgtgatcccgacggccgccactgccaatactaccttgatatcccattttctcagttcacagctgatggagtatcggtccctgaagaggagaaggaaggttacgcatggcttcaagagattgagaaaccagacgagctagcctttgttggagcgttgtatagtggccctcaaatacaggagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

309

Amino Acids

34.21

Weight (kDa)

5.42

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	7 cut(s)	103, 171, 302, 383, 604, 716, 760
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	2 cut(s)	73, 338
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	2 cut(s)	106, 174
AfiI	CCNNNNNNNGG	3 cut(s)	371, 674, 829
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	345, 857
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	7 cut(s)	136, 211, 290, 421, 671, 806, 880
AluI	AGCT	7 cut(s)	136, 211, 290, 421, 671, 806, 880
Alw26I	GTCTC	4 cut(s)	5, 62, 137, 229
AlwI	GGATC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	3 cut(s)	250, 757, 907
ApoI	RAATTY	2 cut(s)	73, 338
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	734, 820, 908
AsuC2I	CCSGG	4 cut(s)	100, 178, 398, 399
AsuHPI	GGTGA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	880
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	734, 820
BanI	GGYRCC	1 cut(s)	173
BarI	GAAGNNNNNNTAC	4 cut(s)	369, 401, 827, 859
BccI	CCATC	3 cut(s)	64, 668, 803
BceAI	ACGGC	1 cut(s)	772
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	4 cut(s)	100, 178, 398, 399
BcoDI	GTCTC	4 cut(s)	5, 62, 137, 229
BfaI	CTAG	1 cut(s)	881
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	3 cut(s)	104, 172, 760
BlsI	GCNGC	3 cut(s)	105, 173, 761
Bme1390I	CCNGG	5 cut(s)	91, 100, 178, 398, 399
Bme18I	GGWCC	2 cut(s)	734, 820
BmeT110I	CYCGRG	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	3 cut(s)	734, 820, 908
BmiI	GGNNCC	3 cut(s)	175, 736, 822
BmrFI	CCNGG	5 cut(s)	91, 100, 178, 398, 399
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	4 cut(s)	217, 328, 457, 616
BmtI	GCTAGC	1 cut(s)	884
BmuI	ACTGGG	1 cut(s)	466
BpuMI	CCSGG	4 cut(s)	100, 178, 398, 399
BsaHI	GRCGYC	2 cut(s)	106, 174
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 674, 829
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	371, 674, 829
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	6 cut(s)	245, 252, 465, 504, 546, 809
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	3 cut(s)	80, 181, 845
BseX3I	CGGCCG	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	3 cut(s)	252, 759, 909
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	5 cut(s)	62, 100, 125, 177, 398
BslFI	GGGAC	4 cut(s)	82, 445, 720, 806
BslI	CCNNNNNNNGG	3 cut(s)	371, 674, 829
BsmAI	GTCTC	4 cut(s)	5, 62, 137, 229
BsmBI	CGTCTC	3 cut(s)	5, 62, 137
BsmFI	GGGAC	4 cut(s)	82, 445, 720, 806
BsnI	GGCC	3 cut(s)	252, 759, 909
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	78, 748
BspACI	CCGC	7 cut(s)	103, 171, 302, 383, 604, 716, 760
BspANI	GGCC	3 cut(s)	252, 759, 909
BspCNI	CTCAG	6 cut(s)	246, 253, 466, 505, 547, 808
BspLI	GGNNCC	3 cut(s)	175, 736, 822
BspMAI	CTGCAG	1 cut(s)	703
BspOI	GCTAGC	1 cut(s)	884
BspPI	GGATC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	78, 748
BssNI	GRCGYC	2 cut(s)	106, 174
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	369, 409
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	2 cut(s)	106, 174
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	6 cut(s)	254, 261, 474, 513, 555, 795
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	81, 751
BstMAI	GTCTC	4 cut(s)	5, 62, 137, 229
BstMBI	GATC	2 cut(s)	78, 748
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 596, 707, 727, 765
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	688, 714
BstSCI	CCNGG	5 cut(s)	89, 98, 176, 396, 397
BstSFI	CTRYAG	1 cut(s)	699
BstZI	CGGCCG	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	252, 759, 909
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	3 cut(s)	696, 708, 763
BtsIMutI	CAGTG	3 cut(s)	696, 708, 763
Cac8I	GCNNGC	1 cut(s)	882
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	734, 820, 908
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	1 cut(s)	95
CviAII	CATG	3 cut(s)	685, 711, 849
DdeI	CTNAG	6 cut(s)	254, 261, 474, 513, 555, 795
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	2 cut(s)	80, 750
DpnII	GATC	2 cut(s)	78, 748
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
EclXI	CGGCCG	1 cut(s)	757
Eco31I	GGTCTC	1 cut(s)	229
Eco32I	GATATC	2 cut(s)	202, 784
Eco47I	GGWCC	2 cut(s)	734, 820
Eco52I	CGGCCG	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	2 cut(s)	202, 784
EcoT22I	ATGCAT	2 cut(s)	441, 690
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
Esp3I	CGTCTC	3 cut(s)	5, 62, 137
FaeI	CATG	3 cut(s)	688, 714, 852
FaqI	GGGAC	4 cut(s)	82, 445, 720, 806
FatI	CATG	3 cut(s)	684, 710, 848
FauI	CCCGC	2 cut(s)	309, 611
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	104, 172, 760
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	104, 172, 760
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	104, 172, 760
GsaI	CCCAGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	252, 759, 909
HapII	CCGG	5 cut(s)	62, 100, 125, 177, 398
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	106, 174
Hin1II	CATG	3 cut(s)	688, 714, 852
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	6 cut(s)	256, 496, 517, 523, 538, 559
HpaII	CCGG	5 cut(s)	62, 100, 125, 177, 398
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	4 cut(s)	114, 196, 522, 543
Hpy188III	TCNNGA	5 cut(s)	205, 260, 430, 752, 857
Hpy8I	GTNNAC	1 cut(s)	801
Hpy99I	CGWCG	2 cut(s)	19, 758
HpyAV	CCTTC	4 cut(s)	579, 613, 829, 833
HpyCH4III	ACNGT	2 cut(s)	369, 409
HpyCH4IV	ACGT	2 cut(s)	17, 146
HpyCH4V	TGCA	7 cut(s)	130, 319, 439, 584, 590, 688, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 596, 707, 727, 765
HpyF3I	CTNAG	6 cut(s)	254, 261, 474, 513, 555, 795
HpySE526I	ACGT	2 cut(s)	17, 146
Hsp92I	GRCGYC	2 cut(s)	106, 174
Hsp92II	CATG	3 cut(s)	688, 714, 852
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	78, 748
LmnI	GCTCC	2 cut(s)	646, 893
LweI	GCATC	4 cut(s)	217, 328, 457, 616
MaeI	CTAG	1 cut(s)	881
MaeII	ACGT	2 cut(s)	17, 146
MaeIII	GTNAC	3 cut(s)	332, 703, 842
MalI	GATC	2 cut(s)	80, 750
MboI	GATC	2 cut(s)	78, 748
MboII	GAAGA	3 cut(s)	127, 209, 839
MfeI	CAATTG	2 cut(s)	489, 531
MluCI	AATT	6 cut(s)	73, 338, 378, 489, 531, 925
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	871
MnlI	CCTC	7 cut(s)	58, 199, 202, 603, 671, 823, 921
Mph1103I	ATGCAT	2 cut(s)	441, 690
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	3 cut(s)	290, 671, 806
MspI	CCGG	5 cut(s)	62, 100, 125, 177, 398
MspR9I	CCNGG	5 cut(s)	91, 100, 178, 398, 399
MunI	CAATTG	2 cut(s)	489, 531
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	301, 596, 707, 727, 765
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	4 cut(s)	100, 178, 398, 399
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	78, 748
NheI	GCTAGC	1 cut(s)	880
NlaIII	CATG	3 cut(s)	688, 714, 852
NlaIV	GGNNCC	3 cut(s)	175, 736, 822
NmuCI	GTSAC	2 cut(s)	332, 703
NsiI	ATGCAT	2 cut(s)	441, 690
NspI	RCATGY	2 cut(s)	688, 714
OliI	CACNNNNGTG	1 cut(s)	701
PfeI	GAWTC	5 cut(s)	496, 517, 523, 538, 559
PflMI	CCANNNNNTGG	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	105, 173, 761
PleI	GAGTC	1 cut(s)	264
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	175, 736, 822
PspPI	GGNCC	3 cut(s)	734, 820, 908
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	3 cut(s)	290, 671, 806
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	104, 172, 760
Sau3AI	GATC	2 cut(s)	78, 748
Sau96I	GGNCC	3 cut(s)	734, 820, 908
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	5 cut(s)	91, 100, 178, 398, 399
SfaNI	GCATC	4 cut(s)	217, 328, 457, 616
SfcI	CTRYAG	1 cut(s)	699
SfoI	GGCGCC	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	734, 820
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	701
Sse9I	AATT	6 cut(s)	73, 338, 378, 489, 531, 925
SsiI	CCGC	7 cut(s)	103, 171, 302, 383, 604, 716, 760
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	5 cut(s)	89, 98, 176, 396, 397
TaaI	ACNGT	2 cut(s)	369, 409
TaiI	ACGT	2 cut(s)	20, 149
TaqI	TCGA	1 cut(s)	77
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	6 cut(s)	73, 338, 378, 489, 531, 925
TauI	GCSGC	3 cut(s)	106, 174, 762
TfiI	GAWTC	5 cut(s)	496, 517, 523, 538, 559
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	703, 708, 770
TseFI	GTSAC	2 cut(s)	332, 703
Tsp45I	GTSAC	2 cut(s)	332, 703
TspDTI	ATGAA	2 cut(s)	41, 377
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	3 cut(s)	703, 708, 770
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	734, 820
XapI	RAATTY	2 cut(s)	73, 338
XceI	RCATGY	2 cut(s)	688, 714
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	881
Zsp2I	ATGCAT	2 cut(s)	441, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.