Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Reverse (-)

84303193 .. 84308066

Gene Structure 4874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG620300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGGGTTGAGACGACGTTGCCCAATCGAAAAGACAACAACAAGGTGCTTCATCCATCGCCGGAGGAGACGAATTCGATCAGCAAGTCCAGGAAGTCCCGGCGGCGTCATCGGAAGATGTCGCCGGTGCAGAAGCTATACGAGACGTGTAAGGCTGTGTTTTCCTTGTGCGGCGCTGGGATTATTCCCTCCTCCGAAGATATCCAGAAGCTATGCTCTGTTTTGGATGCTATGAGACCTGTTGATTTTGGCCTGACTCCTGAGTTGCCATACGAAAGCCTTACAACAGCTAGGCGAACCCCGCCAATCACATACTTGCATCTGTTTGAGTGTGACAAATTTTCAATGGGGATATTCTGTTTGCCGCCGTCAGGTGTAATTCCGCTTCATAATCACCCGGGAATGACGGTTTTCAGTAAGCTTCTTTTCGGGACAATGCATATCAAGTCATATGACTGGGTGGTTGATGCCCCTGAGAAAACACCAACAATTGAGAATCAGCAACCGACAACTGAGAATCAGAATCCAGCAATTGAGAATCAGAAGCCAACACCTGAGAATCCTATTCCTTTCCAAGTTAATGCAGTTGCACCTCCTGCTGCCCGCTTGGCAAAAGTGAAGGTTGATGCCGACTTTACTGCTCCTTGCGACACTAAAATCCTTTATCCAGCTGATGGAGGCAACATGCATTGCTTCACTGCAGTGACAGCATGTGCGGTGCTTGATGTGCTTGGTCCCCCATATTGTGATCCCGACAGCCGCCACTGCCAATACTACCTTGATAGCCCATTTTCTCAGTTCACAGGTACCAAATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

273

Amino Acids

30.3

Weight (kDa)

7.05

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	74 - 268	3.3e-64	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	8 cut(s)	103, 171, 302, 365, 383, 604, 716, 760
AclWI	GGATC	1 cut(s)	743
AcsI	RAATTY	3 cut(s)	73, 338, 812
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	2 cut(s)	371, 674
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	345
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	5 cut(s)	136, 211, 290, 421, 671
AluI	AGCT	5 cut(s)	136, 211, 290, 421, 671
Alw26I	GTCTC	4 cut(s)	5, 62, 137, 229
AlwI	GGATC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	3 cut(s)	73, 338, 812
Asp718I	GGTACC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	3 cut(s)	100, 398, 399
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	806
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	2 cut(s)	64, 668
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	3 cut(s)	100, 398, 399
BcoDI	GTCTC	4 cut(s)	5, 62, 137, 229
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	104, 172, 365, 600, 760
BlsI	GCNGC	5 cut(s)	105, 173, 366, 601, 761
Bme1390I	CCNGG	4 cut(s)	91, 100, 398, 399
Bme18I	GGWCC	1 cut(s)	734
BmeT110I	CYCGRG	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	2 cut(s)	736, 808
BmrFI	CCNGG	4 cut(s)	91, 100, 398, 399
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	4 cut(s)	217, 328, 457, 616
BmuI	ACTGGG	1 cut(s)	466
BpuMI	CCSGG	3 cut(s)	100, 398, 399
BsaHI	GRCGYC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 674
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	52, 232
BseLI	CCNNNNNNNGG	2 cut(s)	371, 674
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	5 cut(s)	252, 465, 504, 546, 809
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	80, 181
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	62, 100, 125, 398
BslFI	GGGAC	3 cut(s)	82, 445, 720
BslI	CCNNNNNNNGG	2 cut(s)	371, 674
BsmAI	GTCTC	4 cut(s)	5, 62, 137, 229
BsmBI	CGTCTC	3 cut(s)	5, 62, 137
BsmFI	GGGAC	3 cut(s)	82, 445, 720
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	78, 748
BspACI	CCGC	8 cut(s)	103, 171, 302, 365, 383, 604, 716, 760
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	5 cut(s)	253, 466, 505, 547, 808
BspLI	GGNNCC	2 cut(s)	736, 808
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	78, 748
BssNI	GRCGYC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	5 cut(s)	261, 474, 513, 555, 795
BstF5I	GGATG	2 cut(s)	52, 232
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	81, 751
BstMAI	GTCTC	4 cut(s)	5, 62, 137, 229
BstMBI	GATC	2 cut(s)	78, 748
BstMWI	GCNNNNNNNGC	6 cut(s)	301, 596, 608, 707, 727, 765
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	688, 714
BstSCI	CCNGG	4 cut(s)	89, 98, 396, 397
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	52, 232
BtsI	GCAGTG	3 cut(s)	696, 708, 763
BtsIMutI	CAGTG	3 cut(s)	696, 708, 763
Cac8I	GCNNGC	1 cut(s)	604
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	734
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	2 cut(s)	685, 711
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	5 cut(s)	261, 474, 513, 555, 795
DpnI	GATC	2 cut(s)	80, 750
DpnII	GATC	2 cut(s)	78, 748
Eco31I	GGTCTC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	2 cut(s)	441, 690
Esp3I	CGTCTC	3 cut(s)	5, 62, 137
FaeI	CATG	2 cut(s)	688, 714
FaqI	GGGAC	3 cut(s)	82, 445, 720
FatI	CATG	2 cut(s)	684, 710
FauI	CCCGC	2 cut(s)	309, 611
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	104, 172, 365, 600, 760
FokI	GGATG	2 cut(s)	39, 239
Fsp4HI	GCNGC	5 cut(s)	104, 172, 365, 600, 760
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	5 cut(s)	104, 172, 365, 600, 760
GsaI	CCCAGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	4 cut(s)	62, 100, 125, 398
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	688, 714
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	6 cut(s)	256, 496, 517, 523, 538, 559
HpaII	CCGG	4 cut(s)	62, 100, 125, 398
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	4 cut(s)	114, 196, 522, 543
Hpy188III	TCNNGA	4 cut(s)	205, 260, 430, 752
Hpy8I	GTNNAC	1 cut(s)	801
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	2 cut(s)	17, 146
HpyCH4V	TGCA	7 cut(s)	130, 319, 439, 584, 590, 688, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	301, 596, 608, 707, 727, 765
HpyF3I	CTNAG	5 cut(s)	261, 474, 513, 555, 795
HpySE526I	ACGT	2 cut(s)	17, 146
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	688, 714
HspAI	GCGC	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	810
Kzo9I	GATC	2 cut(s)	78, 748
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	4 cut(s)	217, 328, 457, 616
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	17, 146
MaeIII	GTNAC	2 cut(s)	332, 703
MalI	GATC	2 cut(s)	80, 750
MboI	GATC	2 cut(s)	78, 748
MboII	GAAGA	2 cut(s)	127, 209
MfeI	CAATTG	2 cut(s)	489, 531
MluCI	AATT	6 cut(s)	73, 338, 378, 489, 531, 812
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	58, 199, 202, 603, 671
Mph1103I	ATGCAT	2 cut(s)	441, 690
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	4 cut(s)	62, 100, 125, 398
MspR9I	CCNGG	4 cut(s)	91, 100, 398, 399
MunI	CAATTG	2 cut(s)	489, 531
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	6 cut(s)	301, 596, 608, 707, 727, 765
NciI	CCSGG	3 cut(s)	100, 398, 399
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	78, 748
NlaIII	CATG	2 cut(s)	688, 714
NlaIV	GGNNCC	2 cut(s)	736, 808
NmuCI	GTSAC	2 cut(s)	332, 703
NsiI	ATGCAT	2 cut(s)	441, 690
NspI	RCATGY	2 cut(s)	688, 714
OliI	CACNNNNGTG	1 cut(s)	701
PfeI	GAWTC	5 cut(s)	496, 517, 523, 538, 559
PflMI	CCANNNNNTGG	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	105, 173, 366, 601, 761
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	736, 808
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	5 cut(s)	104, 172, 365, 600, 760
Sau3AI	GATC	2 cut(s)	78, 748
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	4 cut(s)	91, 100, 398, 399
SfaNI	GCATC	4 cut(s)	217, 328, 457, 616
SfcI	CTRYAG	1 cut(s)	699
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	734
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	701
Sse9I	AATT	6 cut(s)	73, 338, 378, 489, 531, 812
SsiI	CCGC	8 cut(s)	103, 171, 302, 365, 383, 604, 716, 760
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	4 cut(s)	89, 98, 396, 397
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	2 cut(s)	20, 149
TaqI	TCGA	2 cut(s)	28, 77
TasI	AATT	6 cut(s)	73, 338, 378, 489, 531, 812
TauI	GCSGC	4 cut(s)	106, 174, 367, 762
TfiI	GAWTC	5 cut(s)	496, 517, 523, 538, 559
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	703, 708, 770
TseFI	GTSAC	2 cut(s)	332, 703
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	2 cut(s)	332, 703
TspDTI	ATGAA	2 cut(s)	41, 377
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	3 cut(s)	703, 708, 770
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	3 cut(s)	73, 338, 812
XceI	RCATGY	2 cut(s)	688, 714
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	2 cut(s)	441, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.