RLG00000022538

2-aminoethanethiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002785
Physical Location & Seq
Forward (+)
3067363 .. 3069498
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022538

Sequence Viewer

Length: 855 bp
ATGGGAATAGAGGCTGGTGGTTTGGTAGAGCAGCGTAGAGATCGCCATCACAACAAGGTTAATGTTGTTGGGCATCATCATGTTGGTTATATGAAAAATAAGGTTATGAGGAAAAAAAAGTGCAGTAAGAACAGGAAGGTTAAGCATTCTTCTTCTGATTCTGCTCTGCAACGACTCTATGTTTCGTGTAGAGACGTTTTCAAAGGCCTTGGAACACTTCCTTCGCCTCACCATGTGCAGGAATTGTGCAGCGTTCTTGATAAATTTAGGCCGGAAGATGTTGGGCTAAGCAGTGATTTGCAGTTCTTCAAGCCTGAAACTGAGGTCAAAGGCACTCCAAGGGTTACATATACGACCATATACAAGTGCAATAACTTTTCGTTGTGCTGTTTCTTTATTCCAGCAACTGGTGTTATCCCTCTCCATAACCATCCCGGAATGACTGTTTTTAGTAAGCTTCTACTGGGCAAGATGCACATCAAATCATATGATTTGGTTGATCCTATCAAGAATTCAGATGCTTCTCAAGTGAGATTGGCAAAGTTGAAAGCTGATGGTGTATTCACTGCCCCTTGCAAAACATCAGTACTATATCCAACAACAGGTGGCAACATCCACGCCTTCACCGCCATAACTCCTTGTGCGGTGCTTGATGTGATCGGGCCTCCCTATTCTAAAGAAGATGGCCGGGACTGCTCATATTACAAAGATCATCCCTATGCTTCGTATTCAGATGCGAAAGTAACTGAAGAGGAAGGTGATCATTATGCGTGGTTGGAAGAGATTGAGATGCCTGATAACTCAGAAATGGATGGAATCGAGTACTTGGGTCCGCAGATTATTGAGACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

285

Amino Acids

31.81

Weight (kDa)

7.62

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 85 - 280 8.3e-73 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AciI CCGC 3 cut(s) 627, 644, 833
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 2 cut(s) 263, 511
AcuI CTGAAG 1 cut(s) 768
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 588, 824
AfiI CCNNNNNNNGG 3 cut(s) 238, 407, 602
AgsI TTSAA 3 cut(s) 202, 310, 547
AluBI AGCT 2 cut(s) 457, 551
AluI AGCT 2 cut(s) 457, 551
Alw26I GTCTC 2 cut(s) 186, 839
AlwI GGATC 1 cut(s) 494
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 4 cut(s) 205, 269, 662, 685
ApeKI GCWGC 2 cut(s) 31, 249
ApoI RAATTY 2 cut(s) 263, 511
AspS9I GGNCC 2 cut(s) 662, 830
AsuC2I CCSGG 2 cut(s) 435, 689
AsuHPI GGTGA 3 cut(s) 221, 616, 770
AvaII GGWCC 1 cut(s) 830
BbvI GCAGC 2 cut(s) 43, 261
BccI CCATC 5 cut(s) 54, 438, 548, 677, 806
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 2 cut(s) 435, 689
BcoDI GTCTC 2 cut(s) 186, 839
BfaI CTAG 1 cut(s) 853
BisI GCNGC 2 cut(s) 32, 250
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 2 cut(s) 33, 251
BmcAI AGTACT 2 cut(s) 588, 824
Bme1390I CCNGG 2 cut(s) 435, 689
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 2 cut(s) 662, 830
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 435, 689
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 5 cut(s) 82, 462, 508, 724, 780
BmuI ACTGGG 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 435, 689
BsaBI GATNNNNATC 2 cut(s) 45, 476
BsaJI CCNNGG 2 cut(s) 208, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 407, 602
Bse1I ACTGG 2 cut(s) 412, 468
Bse8I GATNNNNATC 2 cut(s) 45, 476
BseDI CCNNGG 2 cut(s) 208, 338
BseGI GGATG 4 cut(s) 430, 612, 712, 817
BseJI GATNNNNATC 2 cut(s) 45, 476
BseLI CCNNNNNNNGG 3 cut(s) 238, 407, 602
BseMII CTCAG 2 cut(s) 312, 816
BseNI ACTGG 2 cut(s) 412, 468
BseXI GCAGC 2 cut(s) 43, 261
BsgI GTGCAG 3 cut(s) 142, 257, 268
BshFI GGCC 4 cut(s) 207, 271, 664, 687
BsiSI CCGG 3 cut(s) 272, 435, 688
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 3 cut(s) 238, 407, 602
BsmAI GTCTC 2 cut(s) 186, 839
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 704
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 4 cut(s) 207, 271, 664, 687
Bsp143I GATC 5 cut(s) 40, 499, 657, 709, 760
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 3 cut(s) 627, 644, 833
BspANI GGCC 4 cut(s) 207, 271, 664, 687
BspCNI CTCAG 2 cut(s) 313, 815
BspLI GGNNCC 1 cut(s) 831
BspPI GGATC 1 cut(s) 494
BsrI ACTGG 2 cut(s) 412, 468
BssECI CCNNGG 2 cut(s) 208, 338
BssMI GATC 5 cut(s) 40, 499, 657, 709, 760
BssT1I CCWWGG 2 cut(s) 208, 338
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 744, 774
BstDEI CTNAG 3 cut(s) 287, 321, 802
BstF5I GGATG 4 cut(s) 430, 612, 712, 817
BstKTI GATC 5 cut(s) 43, 502, 660, 712, 763
BstMAI GTCTC 2 cut(s) 186, 839
BstMBI GATC 5 cut(s) 40, 499, 657, 709, 760
BstMWI GCNNNNNNNGC 2 cut(s) 626, 693
BstSCI CCNGG 2 cut(s) 433, 687
BstV1I GCAGC 2 cut(s) 43, 261
BsuRI GGCC 4 cut(s) 207, 271, 664, 687
BtsCI GGATG 4 cut(s) 430, 612, 712, 817
BtsI GCAGTG 2 cut(s) 298, 564
BtsIMutI CAGTG 2 cut(s) 298, 564
CaiI CAGNNNCTG 1 cut(s) 407
Cfr13I GGNCC 2 cut(s) 662, 830
Csp6I GTAC 2 cut(s) 587, 823
CviAII CATG 2 cut(s) 80, 233
CviJI RGCY 9 cut(s) 14, 207, 271, 286, 313, 457, 551, 664, 687
CviKI_1 RGCY 9 cut(s) 14, 207, 271, 286, 313, 457, 551, 664, 687
CviQI GTAC 2 cut(s) 587, 823
DdeI CTNAG 3 cut(s) 287, 321, 802
DpnI GATC 5 cut(s) 42, 501, 659, 711, 762
DpnII GATC 5 cut(s) 40, 499, 657, 709, 760
DraIII CACNNNGTG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 744, 774
EarI CTCTTC 2 cut(s) 744, 774
Eco130I CCWWGG 2 cut(s) 208, 338
Eco147I AGGCCT 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 511
EcoT14I CCWWGG 2 cut(s) 208, 338
ErhI CCWWGG 2 cut(s) 208, 338
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 83, 236
FaqI GGGAC 1 cut(s) 704
FatI CATG 2 cut(s) 79, 232
FauNDI CATATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 32, 250
FokI GGATG 4 cut(s) 417, 599, 699, 824
Fsp4HI GCNGC 2 cut(s) 32, 250
FspBI CTAG 1 cut(s) 853
GluI GCNGC 2 cut(s) 32, 250
HaeIII GGCC 4 cut(s) 207, 271, 664, 687
HapII CCGG 3 cut(s) 272, 435, 688
Hin1II CATG 2 cut(s) 83, 236
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 158, 174, 816
HpaII CCGG 3 cut(s) 272, 435, 688
HphI GGTGA 3 cut(s) 221, 616, 770
Hpy188I TCNGA 4 cut(s) 157, 517, 733, 805
Hpy188III TCNNGA 2 cut(s) 257, 508
HpyAV CCTTC 4 cut(s) 130, 231, 631, 749
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 8 cut(s) 123, 169, 238, 249, 301, 369, 475, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 693
HpyF3I CTNAG 3 cut(s) 287, 321, 802
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 83, 236
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 40, 499, 657, 709, 760
Lsp1109I GCAGC 2 cut(s) 43, 261
LweI GCATC 5 cut(s) 82, 462, 508, 724, 780
MaeI CTAG 1 cut(s) 853
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 343, 742
MalI GATC 5 cut(s) 42, 501, 659, 711, 762
MboI GATC 5 cut(s) 40, 499, 657, 709, 760
MboII GAAGA 7 cut(s) 141, 144, 287, 298, 692, 761, 791
MluCI AATT 3 cut(s) 242, 263, 511
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 620, 756
MnlI CCTC 7 cut(s) 4, 102, 237, 316, 429, 675, 745
MseI TTAA 2 cut(s) 60, 141
MslI CAYNNNNRTG 2 cut(s) 78, 717
MspI CCGG 3 cut(s) 272, 435, 688
MspR9I CCNGG 2 cut(s) 435, 689
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 626, 693
NciI CCSGG 2 cut(s) 435, 689
NdeI CATATG 1 cut(s) 487
NdeII GATC 5 cut(s) 40, 499, 657, 709, 760
NlaIII CATG 2 cut(s) 83, 236
NlaIV GGNNCC 1 cut(s) 831
PceI AGGCCT 1 cut(s) 207
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 158, 816
PflMI CCANNNNNTGG 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 2 cut(s) 33, 251
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 2 cut(s) 662, 830
PstNI CAGNNNCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 588, 824
RsaNI GTAC 2 cut(s) 587, 823
RseI CAYNNNNRTG 2 cut(s) 78, 717
SaqAI TTAA 2 cut(s) 60, 141
SatI GCNGC 2 cut(s) 32, 250
Sau3AI GATC 5 cut(s) 40, 499, 657, 709, 760
Sau96I GGNCC 2 cut(s) 662, 830
ScaI AGTACT 2 cut(s) 588, 824
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 435, 689
SetI ASST 9 cut(s) 60, 105, 141, 198, 327, 459, 553, 607, 760
SfaNI GCATC 5 cut(s) 82, 462, 508, 724, 780
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 78, 717
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 3 cut(s) 242, 263, 511
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 3 cut(s) 627, 644, 833
SspMI CTAG 1 cut(s) 853
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 433, 687
StyI CCWWGG 2 cut(s) 208, 338
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 819
TasI AATT 3 cut(s) 242, 263, 511
TatI WGTACW 2 cut(s) 586, 822
TfiI GAWTC 2 cut(s) 158, 816
Tru1I TTAA 2 cut(s) 60, 141
Tru9I TTAA 2 cut(s) 60, 141
TscAI CASTG 2 cut(s) 298, 571
TseI GCWGC 2 cut(s) 31, 249
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 298, 571
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 263, 511
XspI CTAG 1 cut(s) 853
ZrmI AGTACT 2 cut(s) 588, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.