Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002785

Physical Location & Seq

Genomic Coordinates Forward (+)

3514629 .. 3517317

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1048300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGCCGGTTCAGAAGCTGTACGAGACTTGCAAGGAAGTCTTTTCGTTTTGTGGGGCCGGGGTCATTCCCCCGGCTGAAGATATCCAACGGCTATCCTCTGTTTTGGATGCCATGGAGCCTGCTGATGTCGGCCTCACTCCTGATTTGCCGTACTTCAGGATGACGGTAGCTAGACGAACCCCGGTTATAACATACCTGCATCTTTACGAGTGCGAAAAATTTTCAATGGGGATATTTTGCTTGCCGCCTTCGGGTGTCTTACCGCTTCATAATCACCCGGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGGACAATGCACATCAAGTCCTACGATTGGGTGGCTGGTGCCCCGGAGAAAACATTGGCAAGTGCGAATCCTTCACTAGTTGCACCGCCCGGTGTTCATCTGGCTAAAGTTAAGGTTGACGCCGATTTCACTGCTCCTTGCAAAACATCCATCCTCTATCCAGCTGATGGAGGCAACATGCATTGCTTCACAGCAGTGACAGCATGTGCAGTGCTCGATGTGCTTGGGCCCCCATATTCTGATCCTGACGGCAGGCACTGCCAGTACTACCTTGATTACCCATTCTCTCGCTTCCCAGATGGGGGAGTATCGGTGCCGGAAGATGAGAAAGAAGGCTATGCTTGGCTTGAAGATATAGAGAAACCTGAGGACTTAGCTGTAGATGGAGCCAAGTACAGAGGCCCAGAAATACAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006091 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009061 GO:0009593 GO:0009628 GO:0009987 GO:0015980 GO:0018158 GO:0018171 GO:0018193 GO:0018198 GO:0019538 GO:0036211 GO:0036293 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050896 GO:0051606 GO:0055114 GO:0070482 GO:0070483 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

245

Amino Acids

26.74

Weight (kDa)

4.86

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	35 - 241	1.2e-76	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15120 AT5G39890 AT5G39890
fragaria_vesca	FvH4_6g18200 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150 FvH4_6g49150
malus_domestica	MD09G1048100.v1.1 MD12G1009100.v1.1 MD12G1009200.v1.1 MD14G1006600.v1.1 MD17G1048300.v1.1
prunus_persica	Prupe.3G270900_v2.0.a1 Prupe.7G011000_v2.0.a1
pyrus_communis	pycom111g03900 pycom14g00520 pycom17g04300
rosa_chinensis	RchiOBHm_Chr2g0169021 RchiOBHm_Chr3g0496281
rosa_laevigata	RLG00000021824 RLG00000022538
rosa_multiflora	Rmu_ssc0000393.1_g000023 Rmu_ssc0000454.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082530 Rroxscaffold_6G00389280
rosa_rugosa	Rorug02G0536500 Rorug02G0536500 Rorug03G0281500
rosa_samantha	Rh2AG607800 Rh2BG620300 Rh2CG589400 Rh2DG631100 Rh3AG328200 Rh3BG364400 Rh3CG361200 Rh3DG364400
rosa_wichuraiana	Rw2G050400 Rw3G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	207
AccB1I	GGYRCC	2 cut(s)	350, 625
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	3 cut(s)	248, 266, 398
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	99, 142
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	4 cut(s)	23, 155, 578, 707
AfiI	CCNNNNNNNGG	5 cut(s)	254, 339, 479, 613, 614
AgsI	TTSAA	2 cut(s)	228, 662
AhlI	ACTAGT	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	19, 173, 304, 476, 689
AluI	AGCT	5 cut(s)	19, 173, 304, 476, 689
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	2 cut(s)	19, 570
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	4 cut(s)	57, 133, 539, 712
ApaI	GGGCCC	1 cut(s)	543
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	57, 539, 540, 713
AsuC2I	CCSGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	2 cut(s)	355, 543
BanI	GGYRCC	2 cut(s)	350, 625
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	528
BccI	CCATC	4 cut(s)	470, 473, 605, 689
BceAI	ACGGC	3 cut(s)	107, 136, 577
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BcnI	CCSGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
BcoDI	GTCTC	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	2 cut(s)	174, 389
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	57, 539, 540, 713
BmiI	GGNNCC	7 cut(s)	58, 120, 352, 541, 542, 627, 700
BmrFI	CCNGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
BmsI	GCATC	2 cut(s)	100, 211
BpuMI	CCSGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	6 cut(s)	60, 72, 114, 183, 280, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 339, 479, 613, 614
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	574
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	6 cut(s)	60, 72, 114, 183, 280, 354
BseGI	GGATG	4 cut(s)	115, 168, 458, 462
BseLI	CCNNNNNNNGG	5 cut(s)	254, 339, 479, 613, 614
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	574
BseSI	GKGCMC	2 cut(s)	355, 543
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	4 cut(s)	59, 135, 541, 714
BshNI	GGYRCC	2 cut(s)	350, 625
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	8 cut(s)	8, 60, 74, 185, 281, 356, 402, 629
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	5 cut(s)	254, 339, 479, 613, 614
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	59, 135, 541, 714
BsoBI	CYCGRG	1 cut(s)	280
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	355, 528, 543
Bsp143I	GATC	1 cut(s)	553
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	3 cut(s)	248, 266, 398
BspANI	GGCC	4 cut(s)	59, 135, 541, 714
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	7 cut(s)	58, 120, 352, 541, 542, 627, 700
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	350, 625
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	6 cut(s)	60, 72, 114, 183, 280, 354
BssMI	GATC	1 cut(s)	553
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	169, 292
BstACI	GRCGYC	1 cut(s)	432
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	123, 245, 566
BstDEI	CTNAG	2 cut(s)	678, 685
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	4 cut(s)	115, 168, 458, 462
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 532, 570
BstNSI	RCATGY	2 cut(s)	493, 519
BstSCI	CCNGG	7 cut(s)	59, 72, 183, 279, 280, 354, 400
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	2 cut(s)	355, 543
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	59, 135, 541, 714
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	115, 168, 458, 462
BtsI	GCAGTG	4 cut(s)	441, 513, 528, 568
BtsIMutI	CAGTG	4 cut(s)	441, 513, 528, 568
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	123, 245, 566
CaiI	CAGNNNCTG	2 cut(s)	19, 570
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	57, 539, 540, 713
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	22, 154, 577, 706
CviAII	CATG	3 cut(s)	115, 490, 516
CviQI	GTAC	4 cut(s)	22, 154, 577, 706
DdeI	CTNAG	2 cut(s)	678, 685
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	99, 142
Eco81I	CCTNAGG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 493, 519
FaiI	YATR	9 cut(s)	116, 191, 196, 273, 491, 517, 547, 651, 668
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	114, 489, 515
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	4 cut(s)	122, 175, 445, 449
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	2 cut(s)	174, 389
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	4 cut(s)	59, 135, 541, 714
HapII	CCGG	8 cut(s)	8, 60, 74, 185, 281, 356, 402, 629
HgaI	GACGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	118, 493, 519
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	8 cut(s)	8, 60, 74, 185, 281, 356, 402, 629
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	15, 553
Hpy188III	TCNNGA	3 cut(s)	143, 160, 557
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	261, 393, 638
HpyCH4III	ACNGT	2 cut(s)	169, 292
HpyCH4V	TGCA	7 cut(s)	33, 202, 322, 395, 453, 493, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 532, 570
HpyF3I	CTNAG	2 cut(s)	678, 685
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	118, 493, 519
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	3 cut(s)	118, 451, 698
LweI	GCATC	2 cut(s)	100, 211
MaeI	CTAG	2 cut(s)	174, 389
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	3 cut(s)	92, 644, 674
MhlI	GDGCHC	3 cut(s)	355, 528, 543
MluCI	AATT	2 cut(s)	221, 730
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	109, 146, 476, 476, 673, 704
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	8 cut(s)	8, 60, 74, 185, 281, 356, 402, 629
MspR9I	CCNGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
MwoI	GCNNNNNNNGC	3 cut(s)	512, 532, 570
NciI	CCSGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	3 cut(s)	118, 493, 519
NlaIV	GGNNCC	7 cut(s)	58, 120, 352, 541, 542, 627, 700
NmuCI	GTSAC	1 cut(s)	508
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	2 cut(s)	493, 519
OliI	CACNNNNGTG	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	191
PspN4I	GGNNCC	7 cut(s)	58, 120, 352, 541, 542, 627, 700
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	4 cut(s)	57, 539, 540, 713
PstNI	CAGNNNCTG	2 cut(s)	19, 570
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	23, 155, 578, 707
RsaNI	GTAC	4 cut(s)	22, 154, 577, 706
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	4 cut(s)	57, 539, 540, 713
ScaI	AGTACT	1 cut(s)	578
ScrFI	CCNGG	7 cut(s)	61, 74, 185, 281, 282, 356, 402
SduI	GDGCHC	3 cut(s)	355, 528, 543
SetI	ASST	9 cut(s)	21, 175, 201, 306, 429, 478, 585, 679, 691
SfaNI	GCATC	2 cut(s)	100, 211
SfcI	CTRYAG	1 cut(s)	690
SmaI	CCCGGG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	388
Sse9I	AATT	2 cut(s)	221, 730
SsiI	CCGC	3 cut(s)	248, 266, 398
SspMI	CTAG	2 cut(s)	174, 389
StyD4I	CCNGG	7 cut(s)	59, 72, 183, 279, 280, 354, 400
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	169, 292
TaqI	TCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	221, 730
TatI	WGTACW	2 cut(s)	576, 705
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	4 cut(s)	448, 513, 528, 575
TseFI	GTSAC	1 cut(s)	508
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	260, 398
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	4 cut(s)	448, 513, 528, 575
Van91I	CCANNNNNTGG	1 cut(s)	479
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	2 cut(s)	493, 519
XmaI	CCCGGG	1 cut(s)	280
XspI	CTAG	2 cut(s)	174, 389
ZrmI	AGTACT	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.