Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

18013149 .. 18015434

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACGACGCAGATATTTCAGTTGCCGTTAAAGTACTGTGCTTCGAGTTTTTCTTCCACCGGCCAACGGAATTACGGTGCTTCTTCTTCGCCGTCTCCGATTGTAATTTGTAAGAGTAATGGAATTTCCGATGGTCTTTGGGTGAAGCGGAGGAAGAACAATCGGAGATTTGGTAGTTTAATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCGTTAACTTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAGAAGATGAAATCGATGAAGGAGATGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGTAATTGAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACTATTATGATTGAGGATCCAAGGGAACTGGAAAGAAGGAGGCTTCTTGGAATAGAAGATGCAGATACTCCAAGCAGAGATGATTTGGCTGAAGCCTTGGAACAGGTAAATGATGGGAAAATCCCTAAAGATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTGAGGTTTCAAAGAAGCAACGAGGAAAGTCAATGTACGCTAAATCCACAGACACTGGAATAGATCCAAAAGAAGCAGCCAAGAGACTCAACGTCGAATGGGATTCAGCTGCTGCAATTGAAGAAGTCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCGTTGTACTTCGTCTCAGCTTTACCAGTTATCATTGGTATCTCTGTTGTATTAATTTTGTTTTACAATTCCCTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.82

Weight (kDa)

4.96

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	752
AciI	CCGC	2 cut(s)	148, 752
AclWI	GGATC	5 cut(s)	302, 410, 423, 559, 644
AcoI	YGGCCR	2 cut(s)	61, 572
AcsI	RAATTY	2 cut(s)	123, 577
AcuI	CTGAAG	3 cut(s)	333, 367, 510
AfaI	GTAC	3 cut(s)	35, 623, 770
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	597, 707
AhdI	GACNNNNNGTC	1 cut(s)	677
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	3 cut(s)	355, 695, 782
AluI	AGCT	3 cut(s)	355, 695, 782
Alw26I	GTCTC	4 cut(s)	99, 195, 664, 781
AlwI	GGATC	5 cut(s)	302, 410, 423, 559, 644
AlwNI	CAGNNNCTG	2 cut(s)	641, 698
AoxI	GGCC	2 cut(s)	61, 572
ApeKI	GCWGC	4 cut(s)	550, 662, 695, 698
ApoI	RAATTY	2 cut(s)	123, 577
AseI	ATTAAT	1 cut(s)	815
AsuHPI	GGTGA	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbvI	GCAGC	4 cut(s)	537, 674, 682, 685
BccI	CCATC	2 cut(s)	125, 506
BceAI	ACGGC	2 cut(s)	10, 76
BcoDI	GTCTC	4 cut(s)	99, 195, 664, 781
BfmI	CTRYAG	1 cut(s)	836
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	551, 663, 696, 699
BlsI	GCNGC	4 cut(s)	552, 664, 697, 700
BmcAI	AGTACT	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	677
BmgBI	CACGTC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	228, 417
BmsI	GCATC	2 cut(s)	448, 537
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	419, 495
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	432, 646, 788
Bse8I	GATNNNNATC	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	419, 495
BseGI	GGATG	1 cut(s)	552
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	3 cut(s)	432, 646, 788
BseXI	GCAGC	4 cut(s)	537, 674, 682, 685
Bsh1236I	CGCG	1 cut(s)	752
BshFI	GGCC	2 cut(s)	63, 574
BshVI	ATCGAT	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	60, 224
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	4 cut(s)	99, 195, 664, 781
BsmBI	CGTCTC	3 cut(s)	99, 195, 781
BsnI	GGCC	2 cut(s)	63, 574
Bsp143I	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
BspACI	CCGC	2 cut(s)	148, 752
BspANI	GGCC	2 cut(s)	63, 574
BspCNI	CTCAG	1 cut(s)	791
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	752
BspLI	GGNNCC	2 cut(s)	228, 417
BspPI	GGATC	5 cut(s)	302, 410, 423, 559, 644
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	432, 646, 788
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	419, 495
BssMI	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
BssT1I	CCWWGG	2 cut(s)	419, 495
Bst4CI	ACNGT	3 cut(s)	38, 77, 840
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	2 cut(s)	359, 778
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	752
BstKTI	GATC	7 cut(s)	310, 319, 381, 418, 532, 567, 652
BstMAI	GTCTC	4 cut(s)	99, 195, 664, 781
BstMBI	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
BstSFI	CTRYAG	1 cut(s)	836
BstUI	CGCG	1 cut(s)	752
BstV1I	GCAGC	4 cut(s)	537, 674, 682, 685
BstX2I	RGATCY	4 cut(s)	307, 316, 415, 649
BstYI	RGATCY	4 cut(s)	307, 316, 415, 649
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	63, 574
BsuTUI	ATCGAT	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	391, 639
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	2 cut(s)	641, 698
Cfr10I	RCCGGY	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	34, 622, 769
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	3 cut(s)	34, 622, 769
DdeI	CTNAG	2 cut(s)	359, 778
DpnI	GATC	7 cut(s)	309, 318, 380, 417, 531, 566, 651
DpnII	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
DriI	GACNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	2 cut(s)	61, 572
Eam1104I	CTCTTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	419, 495
Eco57I	CTGAAG	3 cut(s)	333, 367, 510
EcoT14I	CCWWGG	2 cut(s)	419, 495
ErhI	CCWWGG	2 cut(s)	419, 495
Esp3I	CGTCTC	3 cut(s)	99, 195, 781
FaeI	CATG	1 cut(s)	557
FaiI	YATR	4 cut(s)	377, 407, 555, 759
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	551, 663, 696, 699
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	4 cut(s)	551, 663, 696, 699
GluI	GCNGC	4 cut(s)	551, 663, 696, 699
HaeIII	GGCC	2 cut(s)	63, 574
HapII	CCGG	2 cut(s)	60, 224
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	234, 399
HindII	GTYRAC	2 cut(s)	234, 399
HinfI	GANTC	3 cut(s)	214, 672, 689
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	60, 224
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	234, 399
Hpy188I	TCNGA	4 cut(s)	99, 130, 165, 546
Hpy188III	TCNNGA	2 cut(s)	269, 311
Hpy8I	GTNNAC	2 cut(s)	234, 399
Hpy99I	CGWCG	2 cut(s)	10, 683
HpyAV	CCTTC	3 cut(s)	247, 290, 429
HpyCH4III	ACNGT	3 cut(s)	38, 77, 840
HpyCH4IV	ACGT	3 cut(s)	204, 327, 678
HpyCH4V	TGCA	4 cut(s)	461, 536, 553, 701
HpyF3I	CTNAG	2 cut(s)	359, 778
HpySE526I	ACGT	3 cut(s)	204, 327, 678
Hsp92II	CATG	1 cut(s)	557
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
LmnI	GCTCC	2 cut(s)	241, 761
LpnPI	CCDG	8 cut(s)	73, 176, 237, 324, 413, 488, 627, 801
Lsp1109I	GCAGC	4 cut(s)	537, 674, 682, 685
LweI	GCATC	2 cut(s)	448, 537
MaeII	ACGT	3 cut(s)	204, 327, 678
MaeIII	GTNAC	2 cut(s)	205, 739
MalI	GATC	7 cut(s)	309, 318, 380, 417, 531, 566, 651
MboI	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	4 cut(s)	307, 316, 415, 649
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	8 cut(s)	70, 105, 123, 348, 577, 702, 816, 829
MluNI	TGGCCA	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	666
MnlI	CCTC	9 cut(s)	144, 357, 382, 406, 432, 550, 577, 583, 602
Mox20I	TGGCCA	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	574
MseI	TTAA	6 cut(s)	29, 179, 186, 233, 393, 815
Msp20I	TGGCCA	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	2 cut(s)	60, 224
MunI	CAATTG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	752
NdeII	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	2 cut(s)	228, 417
NmuCI	GTSAC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	214, 689
PkrI	GCNGC	4 cut(s)	552, 664, 697, 700
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	815
PspN4I	GGNNCC	2 cut(s)	228, 417
PstNI	CAGNNNCTG	2 cut(s)	641, 698
PsuI	RGATCY	4 cut(s)	307, 316, 415, 649
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	3 cut(s)	35, 623, 770
RsaNI	GTAC	3 cut(s)	34, 622, 769
SaqAI	TTAA	6 cut(s)	29, 179, 186, 233, 393, 815
SatI	GCNGC	4 cut(s)	551, 663, 696, 699
Sau3AI	GATC	7 cut(s)	307, 316, 378, 415, 529, 564, 649
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	448, 537
SfcI	CTRYAG	1 cut(s)	836
Sse9I	AATT	8 cut(s)	70, 105, 123, 348, 577, 702, 816, 829
SsiI	CCGC	2 cut(s)	148, 752
StyI	CCWWGG	2 cut(s)	419, 495
TaaI	ACNGT	3 cut(s)	38, 77, 840
TaiI	ACGT	3 cut(s)	207, 330, 681
TaqI	TCGA	7 cut(s)	44, 217, 268, 291, 681, 714, 720
TasI	AATT	8 cut(s)	70, 105, 123, 348, 577, 702, 816, 829
TatI	WGTACW	2 cut(s)	33, 768
TfiI	GAWTC	2 cut(s)	214, 689
Tru1I	TTAA	6 cut(s)	29, 179, 186, 233, 393, 815
Tru9I	TTAA	6 cut(s)	29, 179, 186, 233, 393, 815
TscAI	CASTG	2 cut(s)	391, 646
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	550, 662, 695, 698
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	5 cut(s)	291, 300, 309, 348, 741
TspGWI	ACGGA	4 cut(s)	82, 219, 224, 557
TspRI	CASTG	2 cut(s)	391, 646
VspI	ATTAAT	1 cut(s)	815
XapI	RAATTY	2 cut(s)	123, 577
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.