Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

17205771 .. 17206858

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTTGTCCTAATGATTAAACCAGCAAAGAGAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACTGGTTTTGATCTTAAAGAGGCTGCTAAGAGACTGAACATTGATTGGAATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGCTGTGGTTAAGTTCACCATCGCGATTGTGGACATGAGAGAAGTTGAGAGCAGGAAACACATTGGCATCAAAGATCCTGATGCTCCCACCAGGGAGGCTGGTGTTCTTGAAGACGTCCCTCCTTTTAAGTTCCCAGATCCTCTCCTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

5.15

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccII	CGCG	1 cut(s)	197
AclWI	GGATC	2 cut(s)	242, 305
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	37, 263
AluBI	AGCT	2 cut(s)	125, 176
AluI	AGCT	2 cut(s)	125, 176
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	242, 305
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	92, 125
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspA2I	CCTAGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	181
AvrII	CCTAGG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	79, 112
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	39, 265
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	320, 325
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	93, 126
BlnI	CCTAGG	1 cut(s)	319
BlsI	GCNGC	2 cut(s)	94, 127
Bme1390I	CCNGG	2 cut(s)	39, 265
BmrFI	CCNGG	2 cut(s)	39, 265
BmsI	GCATC	3 cut(s)	130, 244, 249
BpiI	GAAGAC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	264, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	39, 265
BseDI	CCNNGG	2 cut(s)	264, 319
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	79, 112
Bsh1236I	CGCG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	79, 247, 310
Bsp68I	TCGCGA	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	197
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	242, 305
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	264, 319
BssMI	GATC	3 cut(s)	79, 247, 310
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	39, 265
BstACI	GRCGYC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	96
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	3 cut(s)	82, 250, 313
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	79, 247, 310
BstNI	CCWGG	2 cut(s)	39, 265
BstSCI	CCNGG	2 cut(s)	37, 263
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	79, 112
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	2 cut(s)	247, 310
BstYI	RGATCY	2 cut(s)	247, 310
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	69
BtuMI	TCGCGA	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	71
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	6 cut(s)	37, 92, 125, 176, 272, 324
CviKI_1	RGCY	6 cut(s)	37, 92, 125, 176, 272, 324
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	81, 249, 312
DpnII	GATC	3 cut(s)	79, 247, 310
Eco130I	CCWWGG	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	37, 263
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	52, 54, 209
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	93, 126
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	93, 126
FspBI	CTAG	2 cut(s)	320, 325
GluI	GCNGC	2 cut(s)	93, 126
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	2 cut(s)	60, 158
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	189, 205
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	196, 251, 281
Hpy8I	GTNNAC	2 cut(s)	189, 205
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	56, 128
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	79, 247, 310
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	79, 112
LweI	GCATC	3 cut(s)	130, 244, 249
MaeI	CTAG	2 cut(s)	320, 325
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	81, 249, 312
MboI	GATC	3 cut(s)	79, 247, 310
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	2 cut(s)	247, 310
MlyI	GAGTC	2 cut(s)	69, 167
MnlI	CCTC	4 cut(s)	82, 262, 303, 324
MseI	TTAA	5 cut(s)	18, 84, 150, 183, 300
MspA1I	CMGCKG	2 cut(s)	125, 176
MspR9I	CCNGG	2 cut(s)	39, 265
MvaI	CCWGG	2 cut(s)	39, 265
MvnI	CGCG	1 cut(s)	197
NdeII	GATC	3 cut(s)	79, 247, 310
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	61
NruI	TCGCGA	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	94, 127
PleI	GAGTC	2 cut(s)	68, 166
PpsI	GAGTC	2 cut(s)	68, 166
Psp6I	CCWGG	2 cut(s)	37, 263
PspGI	CCWGG	2 cut(s)	37, 263
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	247, 310
PvuII	CAGCTG	2 cut(s)	125, 176
RruI	TCGCGA	1 cut(s)	197
SaqAI	TTAA	5 cut(s)	18, 84, 150, 183, 300
SatI	GCNGC	2 cut(s)	93, 126
Sau3AI	GATC	3 cut(s)	79, 247, 310
SchI	GAGTC	2 cut(s)	69, 167
ScrFI	CCNGG	2 cut(s)	39, 265
SetI	ASST	3 cut(s)	127, 178, 291
SfaNI	GCATC	3 cut(s)	130, 244, 249
SfcI	CTRYAG	1 cut(s)	126
SspMI	CTAG	2 cut(s)	320, 325
StyD4I	CCNGG	2 cut(s)	37, 263
StyI	CCWWGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	291
Tru1I	TTAA	5 cut(s)	18, 84, 150, 183, 300
Tru9I	TTAA	5 cut(s)	18, 84, 150, 183, 300
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	92, 125
Tsp45I	GTSAC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmaJI	CCTAGG	1 cut(s)	319
XspI	CTAG	2 cut(s)	320, 325
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.