Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16863588 .. 16864852

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG158500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAATCAATGGCCCAATCTAGAGGCTCAGATTAAACCAGCAAAGAAAAAGCCAGGAAAATCCCTATATGCAAGAGTCACAGACACTGGTATTGATCTTAAAAAGGCCGCTAATAGACTGAACATTGATTGGGATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGTTGTGGTTAAGTTCACCATCGCGATTGAGGACATGAGAGAAGTTGAACGCAGGAAACTTGTTGGCATCAAAGATCCTGATGCTCCCACCAGGGAACAGTTGGCTGGTGTTCTTGAAGAAGTCCCTCCTTTTGAGTTCCCGGATCCTCTCCTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.84

Weight (kDa)

4.7

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	3 cut(s)	257, 326, 339
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	236, 305
AjnI	CCWGG	2 cut(s)	52, 278
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	3 cut(s)	257, 326, 339
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	11, 105
ApeKI	GCWGC	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	54, 280
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	3 cut(s)	20, 341, 346
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	108, 141
BlnI	CCTAGG	1 cut(s)	340
BlsI	GCNGC	2 cut(s)	109, 142
Bme1390I	CCNGG	3 cut(s)	54, 280, 329
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	3 cut(s)	54, 280, 329
BmsI	GCATC	3 cut(s)	145, 259, 264
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	279, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	54, 280
BseDI	CCNNGG	2 cut(s)	279, 340
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	13, 107
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	13, 107
Bsp143I	GATC	3 cut(s)	94, 262, 331
Bsp68I	TCGCGA	1 cut(s)	212
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	13, 107
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	257, 326, 339
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	279, 340
BssMI	GATC	3 cut(s)	94, 262, 331
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	54, 280
Bst4CI	ACNGT	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	3 cut(s)	97, 265, 334
BstMBI	GATC	3 cut(s)	94, 262, 331
BstNI	CCWGG	2 cut(s)	54, 280
BstSCI	CCNGG	3 cut(s)	52, 278, 327
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	262, 331
BstYI	RGATCY	2 cut(s)	262, 331
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	13, 107
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	84
BtuMI	TCGCGA	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	7 cut(s)	13, 26, 52, 107, 140, 293, 345
CviKI_1	RGCY	7 cut(s)	13, 26, 52, 107, 140, 293, 345
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	96, 264, 333
DpnII	GATC	3 cut(s)	94, 262, 331
Eco130I	CCWWGG	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	52, 278
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	67, 69, 224
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	108, 141
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	108, 141
FspBI	CTAG	3 cut(s)	20, 341, 346
GluI	GCNGC	2 cut(s)	108, 141
HaeIII	GGCC	2 cut(s)	13, 107
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	3 cut(s)	4, 75, 173
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	30, 178
Hpy188III	TCNNGA	4 cut(s)	20, 211, 266, 302
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	71, 143
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	94, 262, 331
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	3 cut(s)	145, 259, 264
MaeI	CTAG	3 cut(s)	20, 341, 346
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	96, 264, 333
MboI	GATC	3 cut(s)	94, 262, 331
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	2 cut(s)	262, 331
MlyI	GAGTC	2 cut(s)	84, 182
MnlI	CCTC	4 cut(s)	16, 211, 324, 345
MseI	TTAA	4 cut(s)	33, 99, 165, 198
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	54, 280, 329
MvaI	CCWGG	2 cut(s)	54, 280
MvnI	CGCG	1 cut(s)	212
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	3 cut(s)	94, 262, 331
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	109, 142
PleI	GAGTC	2 cut(s)	83, 181
PpsI	GAGTC	2 cut(s)	83, 181
Psp6I	CCWGG	2 cut(s)	52, 278
PspGI	CCWGG	2 cut(s)	52, 278
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	262, 331
PvuII	CAGCTG	1 cut(s)	140
RruI	TCGCGA	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	33, 99, 165, 198
SatI	GCNGC	2 cut(s)	108, 141
Sau3AI	GATC	3 cut(s)	94, 262, 331
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	84, 182
ScrFI	CCNGG	3 cut(s)	54, 280, 329
SetI	ASST	1 cut(s)	142
SfaNI	GCATC	3 cut(s)	145, 259, 264
SfcI	CTRYAG	1 cut(s)	141
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	3 cut(s)	20, 341, 346
StyD4I	CCNGG	3 cut(s)	52, 278, 327
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	33, 99, 165, 198
Tru9I	TTAA	4 cut(s)	33, 99, 165, 198
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	339
XbaI	TCTAGA	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	340
XspI	CTAG	3 cut(s)	20, 341, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.