Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16194143 .. 16241682

Gene Structure 47540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCATTTTTCCACTATCAAAATTTAAAACAAATATGCAAAGATAGAAAAAGCGAAAAAATCAAGAACATCAAGTTCAGATTAAACCAGCAAAGAGAAAGCCAGGAAAATCACTATATGCAAGTCACAGACACTAGTATTGATCTTAAAGAGGCTGCTAAGAGACTGAACATTGATTGGAATACAGCTGCAGAGATTGACGATGCTGATGCGAAGGATGAGTCAGATGTGCCTTCAGCTGTGGTTTGTTTCCTTGGATTTCTCACGATAAATTGCAGAAGAAAACACAGTGGAGAAGTAAGTTTCCTTATATCAGAAAACCAAGGTTTGACAATGAAGCAAAAAGCCAAGGTTCAGATTAAACCAGCAAAGAGAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACTGGTATTGATCTTAAAGAGGCTGCTAAGAGATTGAACATTGAATGGGATACAGCTGCAGAGATTGACGATGCTGATTTTAAGGATGAGTCAGATGTGCATTCAGTTGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

20.02

Weight (kDa)

6.91

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	448, 455
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	102, 379
AluBI	AGCT	3 cut(s)	188, 239, 467
AluI	AGCT	3 cut(s)	188, 239, 467
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	413
ApeKI	GCWGC	4 cut(s)	155, 188, 434, 467
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
BbvI	GCAGC	4 cut(s)	142, 175, 421, 454
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	104, 381
BciVI	GTATCC	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	157
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	189, 468
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	156, 189, 435, 468
BlsI	GCNGC	4 cut(s)	157, 190, 436, 469
Bme1390I	CCNGG	2 cut(s)	104, 381
BmrFI	CCNGG	2 cut(s)	104, 381
BmsI	GCATC	3 cut(s)	193, 199, 472
BsaJI	CCNNGG	3 cut(s)	253, 322, 348
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	104, 381
BseDI	CCNNGG	3 cut(s)	253, 322, 348
BseGI	GGATG	2 cut(s)	223, 502
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	4 cut(s)	142, 175, 421, 454
BsmAI	GTCTC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	142, 421
BspMAI	CTGCAG	2 cut(s)	193, 472
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	253, 322, 348
BssMI	GATC	2 cut(s)	142, 421
BssT1I	CCWWGG	3 cut(s)	253, 322, 348
Bst2UI	CCWGG	2 cut(s)	104, 381
Bst4CI	ACNGT	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	159, 438
BstF5I	GGATG	2 cut(s)	223, 502
BstKTI	GATC	2 cut(s)	145, 424
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	142, 421
BstNI	CCWGG	2 cut(s)	104, 381
BstSCI	CCNGG	2 cut(s)	102, 379
BstSFI	CTRYAG	2 cut(s)	189, 468
BstV1I	GCAGC	4 cut(s)	142, 175, 421, 454
BsuI	GTATCC	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	223, 502
BtsIMutI	CAGTG	2 cut(s)	295, 411
CaiI	CAGNNNCTG	1 cut(s)	413
CviJI	RGCY	8 cut(s)	102, 155, 188, 239, 347, 379, 434, 467
CviKI_1	RGCY	8 cut(s)	102, 155, 188, 239, 347, 379, 434, 467
DdeI	CTNAG	2 cut(s)	159, 438
DpnI	GATC	2 cut(s)	144, 423
DpnII	GATC	2 cut(s)	142, 421
DraI	TTTAAA	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	253, 322, 348
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	102, 379
EcoT14I	CCWWGG	3 cut(s)	253, 322, 348
ErhI	CCWWGG	3 cut(s)	253, 322, 348
FaiI	YATR	6 cut(s)	37, 117, 119, 311, 394, 396
Fnu4HI	GCNGC	4 cut(s)	156, 189, 435, 468
FokI	GGATG	2 cut(s)	230, 509
Fsp4HI	GCNGC	4 cut(s)	156, 189, 435, 468
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	4 cut(s)	156, 189, 435, 468
HinfI	GANTC	3 cut(s)	221, 402, 500
Hpy188I	TCNGA	5 cut(s)	80, 226, 316, 357, 505
Hpy188III	TCNNGA	2 cut(s)	64, 265
HpyAV	CCTTC	2 cut(s)	208, 243
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	7 cut(s)	39, 121, 191, 276, 398, 470, 511
HpyF3I	CTNAG	2 cut(s)	159, 438
Kzo9I	GATC	2 cut(s)	142, 421
LpnPI	CCDG	7 cut(s)	89, 101, 116, 366, 378, 393, 399
Lsp1109I	GCAGC	4 cut(s)	142, 175, 421, 454
LweI	GCATC	3 cut(s)	193, 199, 472
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	124, 403
MalI	GATC	2 cut(s)	144, 423
MboI	GATC	2 cut(s)	142, 421
MboII	GAAGA	1 cut(s)	291
MluCI	AATT	2 cut(s)	22, 271
MlyI	GAGTC	3 cut(s)	230, 411, 509
MnlI	CCTC	2 cut(s)	145, 424
MseI	TTAA	6 cut(s)	26, 83, 147, 360, 426, 492
MspA1I	CMGCKG	3 cut(s)	188, 239, 467
MspR9I	CCNGG	2 cut(s)	104, 381
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	104, 381
NdeII	GATC	2 cut(s)	142, 421
NmuCI	GTSAC	2 cut(s)	124, 403
PctI	GAATGC	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	157, 190, 436, 469
PleI	GAGTC	3 cut(s)	229, 410, 508
PpsI	GAGTC	3 cut(s)	229, 410, 508
Psp6I	CCWGG	2 cut(s)	102, 379
PspGI	CCWGG	2 cut(s)	102, 379
PstI	CTGCAG	2 cut(s)	193, 472
PstNI	CAGNNNCTG	1 cut(s)	413
PvuII	CAGCTG	3 cut(s)	188, 239, 467
SaqAI	TTAA	6 cut(s)	26, 83, 147, 360, 426, 492
SatI	GCNGC	4 cut(s)	156, 189, 435, 468
Sau3AI	GATC	2 cut(s)	142, 421
SchI	GAGTC	3 cut(s)	230, 411, 509
ScrFI	CCNGG	2 cut(s)	104, 381
SetI	ASST	5 cut(s)	190, 241, 328, 354, 469
SfaNI	GCATC	3 cut(s)	193, 199, 472
SfcI	CTRYAG	2 cut(s)	189, 468
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	2 cut(s)	22, 271
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	102, 379
StyI	CCWWGG	3 cut(s)	253, 322, 348
TaaI	ACNGT	1 cut(s)	290
TasI	AATT	2 cut(s)	22, 271
Tru1I	TTAA	6 cut(s)	26, 83, 147, 360, 426, 492
Tru9I	TTAA	6 cut(s)	26, 83, 147, 360, 426, 492
TscAI	CASTG	2 cut(s)	295, 418
TseFI	GTSAC	2 cut(s)	124, 403
TseI	GCWGC	4 cut(s)	155, 188, 434, 467
Tsp45I	GTSAC	2 cut(s)	124, 403
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	295, 418
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.