Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

37538293 .. 37539972

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1242600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGGTGGTGATGGGTTTGCAAATTCTCCAAGTGGCGCCACCGCCACCACTCACTTCTTCCTCCACCTCCTCCTCCTCCTCATCTTCTTCTTCTTGTCGGGTCCAAACCCTCCCACTCTGGCTCAACCAACGCCACTCCCACTGCCGCCACTCACGGCCTCAGCTTGCTCTCCCACCCCGCCACTCGTTCAAAAGAACCACACTCTCACTCGTCGGCAGGAAAGGTAGGAAATTGCAAGCTTCTTCATCATCTTCTTCAACTACCCAACAAGACCAGGATGACGAAGAAGAATACGAAGACGACAAAGAAGATGAAGAAGATGAATCGGACCCTGACCCGGAAGACCTCGAATACGTGTTGGAGCTTCTCCGAAAGAACAGAGACATGCTTTTCAGTGAGGTTAAGCTCACTGTTATGATTGAGGACCTGCGAGAAGTTGAGCGCAGGAGACTCCTCGGCATTGAAGATCCTGATGCCCCTACTAGGGAGGAATTGGCTGATGTTCTTGAAGAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.86

Weight (kDa)

4.89

Isoelectric Point (pI)

83.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	3 cut(s)	44, 148, 181
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	340, 486, 487
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	193, 261, 467, 512
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	166, 242, 367, 409
AluI	AGCT	4 cut(s)	166, 242, 367, 409
Alw26I	GTCTC	2 cut(s)	378, 445
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	40, 447
AspS9I	GGNCC	3 cut(s)	103, 331, 427
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	103, 331, 427
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	306, 351
BbvCI	CCTCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	378, 445
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	278, 341
Bme18I	GGWCC	3 cut(s)	103, 331, 427
BmgT120I	GGNCC	3 cut(s)	103, 331, 427
BmiI	GGNNCC	3 cut(s)	39, 104, 333
BmrFI	CCNGG	2 cut(s)	278, 341
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	306, 351
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 486, 487
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	340, 486, 487
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	5 cut(s)	61, 64, 67, 70, 446
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	340, 486, 487
BsmAI	GTCTC	2 cut(s)	378, 445
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	3 cut(s)	44, 148, 181
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	39, 104, 333
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	469
BssNI	GRCGYC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	168, 240
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 447
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	378, 445
BstMBI	GATC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	276, 339
BstV2I	GAAGAC	2 cut(s)	306, 351
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	142, 403, 411
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	168, 240
CfoI	GCGC	2 cut(s)	40, 447
Cfr13I	GGNCC	3 cut(s)	103, 331, 427
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	7 cut(s)	124, 160, 166, 242, 367, 409, 500
CviKI_1	RGCY	7 cut(s)	124, 160, 166, 242, 367, 409, 500
DdeI	CTNAG	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	103, 331, 427
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	1 cut(s)	391
FaiI	YATR	2 cut(s)	389, 419
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	2 cut(s)	39, 446
GluI	GCNGC	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	2 cut(s)	40, 447
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	2 cut(s)	38, 445
HinP1I	GCGC	2 cut(s)	38, 445
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	2 cut(s)	326, 453
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	331, 374
Hpy188III	TCNNGA	2 cut(s)	473, 509
Hpy99I	CGWCG	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	22, 238
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	2 cut(s)	38, 445
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	9 cut(s)	106, 205, 263, 290, 348, 354, 433, 443, 486
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	357
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	3 cut(s)	24, 233, 494
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	342
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	278, 341
MvaI	CCWGG	1 cut(s)	278
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	3 cut(s)	39, 104, 333
NmeAIII	GCCGAG	1 cut(s)	438
NspI	RCATGY	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	447
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	39, 104, 333
PspPI	GGNCC	3 cut(s)	103, 331, 427
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	3 cut(s)	103, 331, 427
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	278, 341
SfaNI	GCATC	1 cut(s)	466
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	3 cut(s)	103, 331, 427
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	24, 233, 494
SsiI	CCGC	3 cut(s)	44, 148, 181
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	276, 339
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	24, 233, 494
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	149, 403, 418
TspDTI	ATGAA	4 cut(s)	17, 237, 330, 339
TspRI	CASTG	3 cut(s)	149, 403, 418
VpaK11BI	GGWCC	3 cut(s)	103, 331, 427
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.