Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001585.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

24430 .. 27256

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001585.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgatgatgatgacgagttcgcaaatgctccaggtggcgccactcgcaccacgcgcttcctcctcctcatcttcttcttcgtcccaaaccctcccagtctggttcaaccattgccattgccacccttcacggcctcagctcactctccgccaccgcccaaggtccacaatactactcgccggaaacccagataggaagttgcaagtttcatcgtctccgtcgtcatcttggactacccaacaagaccaggacgatgaagaagaagaagaaagtgagcctactcctgacgacctcgaatacatcagccaaatcaaaagggtgttggagcttcttaagaagaacagagacatgattttcaatgaggttaagcttactattgcgattgaggacataagagaagttgagcggaggagactccttggcattgaggatcctgatactacgaccagggaagagttggctgctgttcttgaagaagctcagattaaaccagcaaagaaaaagccaggaaaatccctatatgcaagagtcacagacactggtattgatcttaaaaaggccgctaatagactgaacattgattgggatacagctgcagagattgacgatgctgatgttaaggatgagttagatgtgccttcagttgtggttaagttcaccatcgcgattgaggacatgagagaagttgaacgcaggaaacttgttggcatcaaagatcctgatgctcccaccagggaacagttggctggtgttcttgaagaagtccctccttttgagttcccggatcctctcctaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.99

Weight (kDa)

4.87

Isoelectric Point (pI)

64.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	2 cut(s)	54, 665
AciI	CCGC	4 cut(s)	148, 154, 406, 561
AclWI	GGATC	5 cut(s)	425, 438, 710, 779, 792
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflII	CTTAAG	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	106, 358, 473, 689, 758
AjnI	CCWGG	5 cut(s)	30, 246, 446, 505, 731
AluBI	AGCT	5 cut(s)	139, 328, 370, 479, 593
AluI	AGCT	5 cut(s)	139, 328, 370, 479, 593
Alw26I	GTCTC	3 cut(s)	219, 339, 406
AlwI	GGATC	5 cut(s)	425, 438, 710, 779, 792
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	131, 558
ApeKI	GCWGC	2 cut(s)	461, 593
AspA2I	CCTAGG	1 cut(s)	793
AspLEI	GCGC	2 cut(s)	40, 56
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	162
AvrII	CCTAGG	1 cut(s)	793
BamHI	GGATCC	2 cut(s)	430, 784
BanI	GGYRCC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	448, 580
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	5 cut(s)	32, 248, 448, 507, 733
BciVI	GTATCC	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	3 cut(s)	219, 339, 406
BfaI	CTAG	2 cut(s)	794, 799
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	462, 561, 594
BlnI	CCTAGG	1 cut(s)	793
BlsI	GCNGC	3 cut(s)	463, 562, 595
Bme1390I	CCNGG	6 cut(s)	32, 248, 448, 507, 733, 782
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	39, 432, 786
BmrFI	CCNGG	6 cut(s)	32, 248, 448, 507, 733, 782
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	598, 712, 717
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	782
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	5 cut(s)	158, 418, 447, 732, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	95, 544
Bse3DI	GCAATG	2 cut(s)	109, 115
BseBI	CCWGG	5 cut(s)	32, 248, 448, 507, 733
BseDI	CCNNGG	5 cut(s)	158, 418, 447, 732, 793
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	2 cut(s)	109, 115
BseMII	CTCAG	2 cut(s)	149, 494
BseNI	ACTGG	2 cut(s)	95, 544
BseRI	GAGGAG	3 cut(s)	52, 55, 424
BseXI	GCAGC	2 cut(s)	448, 580
Bsh1236I	CGCG	2 cut(s)	54, 665
BshFI	GGCC	2 cut(s)	133, 560
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	180, 782
BslFI	GGGAC	2 cut(s)	67, 749
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	219, 339, 406
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	67, 749
BsnI	GGCC	2 cut(s)	133, 560
Bsp143I	GATC	4 cut(s)	430, 547, 715, 784
Bsp68I	TCGCGA	1 cut(s)	665
BspACI	CCGC	4 cut(s)	148, 154, 406, 561
BspANI	GGCC	2 cut(s)	133, 560
BspCNI	CTCAG	2 cut(s)	148, 493
BspFNI	CGCG	2 cut(s)	54, 665
BspLI	GGNNCC	3 cut(s)	39, 432, 786
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	5 cut(s)	425, 438, 710, 779, 792
BspT107I	GGYRCC	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	109, 115
BsrI	ACTGG	2 cut(s)	95, 544
BssECI	CCNNGG	5 cut(s)	158, 418, 447, 732, 793
BssMI	GATC	4 cut(s)	430, 547, 715, 784
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	3 cut(s)	158, 418, 793
Bst2UI	CCWGG	5 cut(s)	32, 248, 448, 507, 733
Bst4CI	ACNGT	1 cut(s)	741
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	135, 480
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	2 cut(s)	54, 665
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 56
BstKTI	GATC	4 cut(s)	433, 550, 718, 787
BstMAI	GTCTC	3 cut(s)	219, 339, 406
BstMBI	GATC	4 cut(s)	430, 547, 715, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstNI	CCWGG	5 cut(s)	32, 248, 448, 507, 733
BstSCI	CCNGG	6 cut(s)	30, 246, 446, 505, 731, 780
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	2 cut(s)	54, 665
BstV1I	GCAGC	2 cut(s)	448, 580
BstX2I	RGATCY	3 cut(s)	430, 715, 784
BstYI	RGATCY	3 cut(s)	430, 715, 784
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	133, 560
BtgZI	GCGATG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	537
BtuMI	TCGCGA	1 cut(s)	665
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	40, 56
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	2 cut(s)	349, 676
DdeI	CTNAG	2 cut(s)	135, 480
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	4 cut(s)	432, 549, 717, 786
DpnII	GATC	4 cut(s)	430, 547, 715, 784
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	3 cut(s)	158, 418, 793
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoRII	CCWGG	5 cut(s)	30, 246, 446, 505, 731
EcoT14I	CCWWGG	3 cut(s)	158, 418, 793
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	158, 418, 793
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	352, 679
FaiI	YATR	5 cut(s)	350, 392, 520, 522, 677
FaqI	GGGAC	2 cut(s)	67, 749
FatI	CATG	2 cut(s)	348, 675
Fnu4HI	GCNGC	3 cut(s)	462, 561, 594
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	462, 561, 594
FspBI	CTAG	2 cut(s)	794, 799
GlaI	GCGC	2 cut(s)	39, 55
GluI	GCNGC	3 cut(s)	462, 561, 594
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	133, 560
HapII	CCGG	2 cut(s)	180, 782
HhaI	GCGC	2 cut(s)	40, 56
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	352, 679
Hin6I	GCGC	2 cut(s)	38, 54
HinP1I	GCGC	2 cut(s)	38, 54
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	414, 528
HpaII	CCGG	2 cut(s)	180, 782
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	165, 657
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	6 cut(s)	284, 434, 470, 664, 719, 755
Hpy8I	GTNNAC	2 cut(s)	165, 657
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	135, 648
HpyCH4III	ACNGT	1 cut(s)	741
HpyCH4V	TGCA	3 cut(s)	202, 524, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpyF3I	CTNAG	2 cut(s)	135, 480
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	352, 679
HspAI	GCGC	2 cut(s)	38, 54
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	430, 547, 715, 784
LmnI	GCTCC	3 cut(s)	33, 325, 730
Lsp1109I	GCAGC	2 cut(s)	448, 580
LweI	GCATC	3 cut(s)	598, 712, 717
MaeI	CTAG	2 cut(s)	794, 799
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	432, 549, 717, 786
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	4 cut(s)	430, 547, 715, 784
MflI	RGATCY	3 cut(s)	430, 715, 784
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	408, 537
MmeI	TCCRAC	1 cut(s)	303
MseI	TTAA	6 cut(s)	333, 366, 486, 552, 618, 651
MspA1I	CMGCKG	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	2 cut(s)	180, 782
MspR9I	CCNGG	6 cut(s)	32, 248, 448, 507, 733, 782
MvaI	CCWGG	5 cut(s)	32, 248, 448, 507, 733
MvnI	CGCG	2 cut(s)	54, 665
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	4 cut(s)	430, 547, 715, 784
NlaIII	CATG	2 cut(s)	352, 679
NlaIV	GGNNCC	3 cut(s)	39, 432, 786
NmuCI	GTSAC	1 cut(s)	529
NruI	TCGCGA	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	3 cut(s)	463, 562, 595
PleI	GAGTC	2 cut(s)	408, 536
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	2 cut(s)	408, 536
Psp6I	CCWGG	5 cut(s)	30, 246, 446, 505, 731
PspGI	CCWGG	5 cut(s)	30, 246, 446, 505, 731
PspN4I	GGNNCC	3 cut(s)	39, 432, 786
PspPI	GGNCC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	3 cut(s)	430, 715, 784
PvuII	CAGCTG	1 cut(s)	593
RruI	TCGCGA	1 cut(s)	665
SaqAI	TTAA	6 cut(s)	333, 366, 486, 552, 618, 651
SatI	GCNGC	3 cut(s)	462, 561, 594
Sau3AI	GATC	4 cut(s)	430, 547, 715, 784
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	408, 537
ScrFI	CCNGG	6 cut(s)	32, 248, 448, 507, 733, 782
SetI	ASST	9 cut(s)	36, 141, 164, 294, 330, 366, 372, 481, 595
SfaNI	GCATC	3 cut(s)	598, 712, 717
SfcI	CTRYAG	1 cut(s)	594
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	4 cut(s)	148, 154, 406, 561
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	794, 799
StyD4I	CCNGG	6 cut(s)	30, 246, 446, 505, 731, 780
StyI	CCWWGG	3 cut(s)	158, 418, 793
TaaI	ACNGT	1 cut(s)	741
TaqI	TCGA	1 cut(s)	294
TauI	GCSGC	1 cut(s)	563
Tru1I	TTAA	6 cut(s)	333, 366, 486, 552, 618, 651
Tru9I	TTAA	6 cut(s)	333, 366, 486, 552, 618, 651
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	461, 593
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	198, 270
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	2 cut(s)	454, 739
XmaJI	CCTAGG	1 cut(s)	793
XspI	CTAG	2 cut(s)	794, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.