Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

56817 .. 59479

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001784.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgaagaagaagcagatgaagacgatgaccaagaagaagaagaagaaagtgaccctactccagaagacctcgaatacttcagcgggggttcagattaaaccagcaaagagaaagccaggaaaatcactatatccaagagtcacagacactggtattgatcttaaagaggctgctaagagactgaacattgattggaatacagctgcagagattgacgatgctgatgttaaggatgagtcagatgtgccttcagctgtgcccctacgctcccctgtgcacgcatccctgctgcccctgcagcaccaacgcacacccactgcatccttctccgttcctgtgcacacccgtctgcttccaaaccccgaaacggtcaatgttctaaaaaacggcctaggcggcaaggaaccgctccgattttggcctaggcgtttcccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.2

Weight (kDa)

10.38

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	409
AciI	CCGC	3 cut(s)	83, 396, 407
AcuI	CTGAAG	2 cut(s)	63, 234
AfiI	CCNNNNNNNGG	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	203, 254
AluI	AGCT	2 cut(s)	203, 254
Alw21I	GWGCWC	2 cut(s)	279, 342
Alw26I	GTCTC	1 cut(s)	172
Alw44I	GTGCAC	2 cut(s)	275, 338
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	388, 419
ApaLI	GTGCAC	2 cut(s)	275, 338
ApeKI	GCWGC	4 cut(s)	170, 203, 289, 298
AspA2I	CCTAGG	2 cut(s)	391, 422
AvrII	CCTAGG	2 cut(s)	391, 422
BaeGI	GKGCMC	3 cut(s)	261, 279, 342
BbsI	GAAGAC	2 cut(s)	26, 71
Bbv12I	GWGCWC	2 cut(s)	279, 342
BbvI	GCAGC	4 cut(s)	157, 190, 276, 310
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	392, 423
BfmI	CTRYAG	2 cut(s)	204, 296
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	5 cut(s)	171, 204, 290, 299, 397
BlnI	CCTAGG	2 cut(s)	391, 422
BlsI	GCNGC	5 cut(s)	172, 205, 291, 300, 398
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	208, 290, 329
BpiI	GAAGAC	2 cut(s)	26, 71
BpmI	CTGGAG	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	391, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	391, 422
BseGI	GGATG	3 cut(s)	238, 281, 320
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	3 cut(s)	261, 279, 342
BseXI	GCAGC	4 cut(s)	157, 190, 276, 310
BshFI	GGCC	2 cut(s)	390, 421
BsiHKAI	GWGCWC	2 cut(s)	279, 342
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	390, 421
Bsp1286I	GDGCHC	3 cut(s)	261, 279, 342
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	83, 396, 407
BspANI	GGCC	2 cut(s)	390, 421
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	2 cut(s)	208, 300
BsrBI	CCGCTC	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	391, 422
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	391, 422
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	174, 435
BstF5I	GGATG	3 cut(s)	238, 281, 320
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 298, 396
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	204, 296
BstSLI	GKGCMC	3 cut(s)	261, 279, 342
BstV1I	GCAGC	4 cut(s)	157, 190, 276, 310
BstV2I	GAAGAC	2 cut(s)	26, 71
BsuRI	GGCC	2 cut(s)	390, 421
BtsCI	GGATG	3 cut(s)	238, 281, 320
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	147, 315
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	115, 170, 203, 254, 390, 421
CviKI_1	RGCY	6 cut(s)	115, 170, 203, 254, 390, 421
DdeI	CTNAG	2 cut(s)	174, 435
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	391, 422
Eco57I	CTGAAG	2 cut(s)	63, 234
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	391, 422
ErhI	CCWWGG	2 cut(s)	391, 422
FaiI	YATR	1 cut(s)	130
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	171, 204, 290, 299, 397
FokI	GGATG	3 cut(s)	245, 268, 307
Fsp4HI	GCNGC	5 cut(s)	171, 204, 290, 299, 397
FspBI	CTAG	2 cut(s)	392, 423
GluI	GCNGC	5 cut(s)	171, 204, 290, 299, 397
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	390, 421
HinfI	GANTC	2 cut(s)	138, 236
Hpy166II	GTNNAC	2 cut(s)	277, 340
Hpy188I	TCNGA	3 cut(s)	93, 241, 413
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	277, 340
HpyAV	CCTTC	2 cut(s)	258, 334
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	206, 277, 298, 320, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 298, 396
HpyF3I	CTNAG	2 cut(s)	174, 435
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	272, 414
LpnPI	CCDG	9 cut(s)	74, 102, 114, 129, 135, 285, 299, 308, 348
Lsp1109I	GCAGC	4 cut(s)	157, 190, 276, 310
LweI	GCATC	3 cut(s)	208, 290, 329
MaeI	CTAG	2 cut(s)	392, 423
MaeIII	GTNAC	2 cut(s)	49, 139
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	1 cut(s)	157
MboII	GAAGA	8 cut(s)	16, 19, 31, 46, 49, 52, 55, 76
MhlI	GDGCHC	3 cut(s)	261, 279, 342
MlyI	GAGTC	2 cut(s)	147, 245
MnlI	CCTC	2 cut(s)	79, 160
MseI	TTAA	3 cut(s)	96, 162, 228
MspA1I	CMGCKG	3 cut(s)	83, 203, 254
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	295, 298, 396
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	49, 139
PkrI	GCNGC	5 cut(s)	172, 205, 291, 300, 398
PleI	GAGTC	2 cut(s)	146, 244
PpsI	GAGTC	2 cut(s)	146, 244
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	405
PstI	CTGCAG	2 cut(s)	208, 300
PstNI	CAGNNNCTG	1 cut(s)	149
PvuII	CAGCTG	2 cut(s)	203, 254
SaqAI	TTAA	3 cut(s)	96, 162, 228
SatI	GCNGC	5 cut(s)	171, 204, 290, 299, 397
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	147, 245
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	3 cut(s)	261, 279, 342
SetI	ASST	3 cut(s)	71, 205, 256
SfaNI	GCATC	3 cut(s)	208, 290, 329
SfcI	CTRYAG	2 cut(s)	204, 296
SsiI	CCGC	3 cut(s)	83, 396, 407
SspMI	CTAG	2 cut(s)	392, 423
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	391, 422
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	71
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	3 cut(s)	96, 162, 228
Tru9I	TTAA	3 cut(s)	96, 162, 228
TscAI	CASTG	2 cut(s)	154, 322
TseFI	GTSAC	2 cut(s)	49, 139
TseI	GCWGC	4 cut(s)	170, 203, 289, 298
Tsp45I	GTSAC	2 cut(s)	49, 139
TspDTI	ATGAA	2 cut(s)	17, 32
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	2 cut(s)	154, 322
VneI	GTGCAC	2 cut(s)	275, 338
XmaJI	CCTAGG	2 cut(s)	391, 422
XspI	CTAG	2 cut(s)	392, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.