Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16100667 .. 16103684

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATGATGAAGAGTTCGCAAATGCTCCAAGTGGCGCCACTCGCATCACACGCTTCCTCCTCCTCATCTTCTTCTTCGTCCAAAACCCTCCCAGTCTGGTTCATCCATTGCCATTGCCACCCTTCACGGCCTCAGCTCACTCTCCGCCACCGCCCAAGGTCCACAATACTACTCGCCGGAAACCCAGATAGGAAGTTGCAAGTTTCATCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGAAGAAGATGAAGACGATGACCAAGAAGAAGAAGAAGAAAGTGACCCTACTCCTGACGACCTCGAATACATCAGCCAAATCAAAAGGGTGTTGGAGCTTCTTAAGAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACTATTGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCTGATGCTCCGACCAGGGAAGAGTTGGCTGCTGTTCTTGAAGAAGTGCATGAGGGAAAAATCCCCAAAAATCGACTTGCACTTAAACTGCTAGCTGAGGAAATGAATCGATGGCCCAATCTAGAGGTTCAGATTAAACCAGCAAAGAAAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACCGGTATTGATCTGAAAGAGGCTGCTAAGAGACTGAACATTGATTGGGATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGTTGTGGTTTGTTTCTTTGGCTTTCTCACGATGAATTGGTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.32

Weight (kDa)

4.77

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	436
AciI	CCGC	3 cut(s)	145, 151, 436
AclWI	GGATC	2 cut(s)	455, 468
AcuI	CTGAAG	1 cut(s)	735
AcyI	GRCGYC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	2 cut(s)	388, 503
AjnI	CCWGG	3 cut(s)	243, 476, 616
AluBI	AGCT	5 cut(s)	136, 358, 400, 557, 704
AluI	AGCT	5 cut(s)	136, 358, 400, 557, 704
Alw26I	GTCTC	3 cut(s)	369, 436, 673
AlwI	GGATC	2 cut(s)	455, 468
AoxI	GGCC	2 cut(s)	128, 575
ApeKI	GCWGC	3 cut(s)	491, 671, 704
AsiGI	ACCGGT	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	159, 576
AsuNHI	GCTAGC	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	204, 279
BbvCI	CCTCAGC	2 cut(s)	132, 558
BbvI	GCAGC	3 cut(s)	478, 658, 691
BccI	CCATC	1 cut(s)	567
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	245, 478, 618
BciVI	GTATCC	1 cut(s)	691
BcoDI	GTCTC	3 cut(s)	369, 436, 673
BfaI	CTAG	2 cut(s)	554, 584
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	492, 672, 705
BlsI	GCNGC	3 cut(s)	493, 673, 706
Bme1390I	CCNGG	3 cut(s)	245, 478, 618
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 576
BmiI	GGNNCC	2 cut(s)	36, 462
BmrFI	CCNGG	3 cut(s)	245, 478, 618
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	53, 457, 709
BmtI	GCTAGC	1 cut(s)	557
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	204, 279
Bpu10I	CCTNAGC	2 cut(s)	132, 558
Bsa29I	ATCGAT	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	155, 448, 477
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	106, 112
BseBI	CCWGG	3 cut(s)	245, 478, 618
BseCI	ATCGAT	1 cut(s)	571
BseDI	CCNNGG	3 cut(s)	155, 448, 477
BseGI	GGATG	2 cut(s)	102, 739
BseMI	GCAATG	2 cut(s)	106, 112
BseMII	CTCAG	2 cut(s)	146, 549
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	3 cut(s)	49, 52, 454
BseXI	GCAGC	3 cut(s)	478, 658, 691
BshFI	GGCC	2 cut(s)	130, 577
BshNI	GGYRCC	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	650
BshVI	ATCGAT	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	177, 651
BsmAI	GTCTC	3 cut(s)	369, 436, 673
BsnI	GGCC	2 cut(s)	130, 577
Bsp143I	GATC	2 cut(s)	460, 658
BspACI	CCGC	3 cut(s)	145, 151, 436
BspANI	GGCC	2 cut(s)	130, 577
BspCNI	CTCAG	2 cut(s)	145, 550
BspDI	ATCGAT	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	36, 462
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	2 cut(s)	455, 468
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	106, 112
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	3 cut(s)	155, 448, 477
BssMI	GATC	2 cut(s)	460, 658
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	155, 448
Bst2UI	CCWGG	3 cut(s)	245, 478, 618
Bst6I	CTCTTC	2 cut(s)	5, 477
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	132, 558, 675
BstF5I	GGATG	2 cut(s)	102, 739
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	463, 661
BstMAI	GTCTC	3 cut(s)	369, 436, 673
BstMBI	GATC	2 cut(s)	460, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	3 cut(s)	245, 478, 618
BstSCI	CCNGG	3 cut(s)	243, 476, 616
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	478, 658, 691
BstV2I	GAAGAC	2 cut(s)	204, 279
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	130, 577
BsuTUI	ATCGAT	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	102, 739
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	159, 576
ClaI	ATCGAT	1 cut(s)	571
CspAI	ACCGGT	1 cut(s)	650
CviAII	CATG	2 cut(s)	379, 512
DdeI	CTNAG	3 cut(s)	132, 558, 675
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	2 cut(s)	462, 660
DpnII	GATC	2 cut(s)	460, 658
Eam1104I	CTCTTC	2 cut(s)	5, 477
EarI	CTCTTC	2 cut(s)	5, 477
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	155, 448
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	735
EcoRII	CCWGG	3 cut(s)	243, 476, 616
EcoT14I	CCWWGG	2 cut(s)	155, 448
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	155, 448
FaeI	CATG	2 cut(s)	382, 515
FaiI	YATR	5 cut(s)	380, 422, 513, 631, 633
FatI	CATG	2 cut(s)	378, 511
Fnu4HI	GCNGC	3 cut(s)	492, 672, 705
FokI	GGATG	2 cut(s)	89, 746
Fsp4HI	GCNGC	3 cut(s)	492, 672, 705
FspBI	CTAG	2 cut(s)	554, 584
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	492, 672, 705
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	130, 577
HapII	CCGG	2 cut(s)	177, 651
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	382, 515
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	4 cut(s)	444, 568, 639, 737
HpaII	CCGG	2 cut(s)	177, 651
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	474, 594, 663, 742
Hpy188III	TCNNGA	5 cut(s)	314, 464, 500, 584, 781
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	132, 759
HpyCH4V	TGCA	5 cut(s)	199, 511, 542, 635, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	3 cut(s)	132, 558, 675
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	382, 515
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	460, 658
LmnI	GCTCC	3 cut(s)	30, 355, 475
Lsp1109I	GCAGC	3 cut(s)	478, 658, 691
LweI	GCATC	3 cut(s)	53, 457, 709
MaeI	CTAG	2 cut(s)	554, 584
MaeIII	GTNAC	2 cut(s)	302, 640
MalI	GATC	2 cut(s)	462, 660
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	2 cut(s)	460, 658
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	1 cut(s)	787
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	438, 648, 746
MmeI	TCCRAC	2 cut(s)	333, 497
MseI	TTAA	6 cut(s)	363, 396, 546, 597, 729, 799
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	177, 651
MspR9I	CCNGG	3 cut(s)	245, 478, 618
MvaI	CCWGG	3 cut(s)	245, 478, 618
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	2 cut(s)	460, 658
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	2 cut(s)	382, 515
NlaIV	GGNNCC	2 cut(s)	36, 462
NmuCI	GTSAC	2 cut(s)	302, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	493, 673, 706
PleI	GAGTC	3 cut(s)	438, 647, 745
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	3 cut(s)	438, 647, 745
Psp6I	CCWGG	3 cut(s)	243, 476, 616
PspGI	CCWGG	3 cut(s)	243, 476, 616
PspN4I	GGNNCC	2 cut(s)	36, 462
PspPI	GGNCC	2 cut(s)	159, 576
PstI	CTGCAG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	704
SaqAI	TTAA	6 cut(s)	363, 396, 546, 597, 729, 799
SatI	GCNGC	3 cut(s)	492, 672, 705
Sau3AI	GATC	2 cut(s)	460, 658
Sau96I	GGNCC	2 cut(s)	159, 576
SchI	GAGTC	3 cut(s)	438, 648, 746
ScrFI	CCNGG	3 cut(s)	245, 478, 618
SetI	ASST	9 cut(s)	138, 161, 324, 360, 396, 402, 559, 591, 706
SfaNI	GCATC	3 cut(s)	53, 457, 709
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	787
SsiI	CCGC	3 cut(s)	145, 151, 436
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	554, 584
StyD4I	CCNGG	3 cut(s)	243, 476, 616
StyI	CCWWGG	2 cut(s)	155, 448
TaqI	TCGA	3 cut(s)	324, 535, 571
TasI	AATT	1 cut(s)	787
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	6 cut(s)	363, 396, 546, 597, 729, 799
Tru9I	TTAA	6 cut(s)	363, 396, 546, 597, 729, 799
TseFI	GTSAC	2 cut(s)	302, 640
TseI	GCWGC	3 cut(s)	491, 671, 704
Tsp45I	GTSAC	2 cut(s)	302, 640
TspDTI	ATGAA	7 cut(s)	23, 91, 195, 267, 285, 581, 800
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XspI	CTAG	2 cut(s)	554, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.