Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

28869237 .. 28874850

Gene Structure 5614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATTCCGATCCTTCAAATTTTCGCTGGATTTGCTCCATCATTGGAGAACCGATCTGTTGGAGCTTCTTAAGAAGAACCAAAACATGGTTTTCAATTCATGAGAATGTTAAGCTCACCATCGAGATTGGGGACACGAGAAAGATGAGTGCAAAGCGACTCCTTGGCATCAAAGACCCTGATGCTCCCACCAGGGAAGAGTTGGCTGCTGTTCTTGAAGAAGTCCCTTCTTTTAAGTTCCTATGCATAATGCTCACTTTCCGAAACAATTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.74

Weight (kDa)

7.72

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	18, 96, 218
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	66, 115
AluI	AGCT	2 cut(s)	66, 115
AlwI	GGATC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	109
BauI	CACGAG	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	47, 128
BciT130I	CCWGG	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	172, 177
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	163, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	163, 192
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	146, 209
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	146, 209
Bsp143I	GATC	2 cut(s)	10, 54
BspHI	TCATGA	1 cut(s)	100
BspPI	GGATC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	163, 192
BssMI	GATC	2 cut(s)	10, 54
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	13, 57
BstMBI	GATC	2 cut(s)	10, 54
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	193
CciI	TCATGA	1 cut(s)	100
CviAII	CATG	2 cut(s)	87, 101
CviJI	RGCY	3 cut(s)	66, 115, 206
CviKI_1	RGCY	3 cut(s)	66, 115, 206
DpnI	GATC	2 cut(s)	12, 56
DpnII	GATC	2 cut(s)	10, 54
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	90, 104
FaiI	YATR	4 cut(s)	88, 102, 244, 248
FaqI	GGGAC	2 cut(s)	146, 209
FatI	CATG	2 cut(s)	86, 100
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	90, 104
HinfI	GANTC	2 cut(s)	5, 159
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	10, 263
Hpy188III	TCNNGA	3 cut(s)	101, 124, 215
HpyAV	CCTTC	2 cut(s)	24, 237
HpyCH4V	TGCA	2 cut(s)	152, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	90, 104
Kzo9I	GATC	2 cut(s)	10, 54
LmnI	GCTCC	3 cut(s)	41, 63, 190
LpnPI	CCDG	4 cut(s)	13, 178, 192, 205
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	172, 177
MalI	GATC	2 cut(s)	12, 56
MboI	GATC	2 cut(s)	10, 54
MboII	GAAGA	3 cut(s)	87, 209, 230
MluCI	AATT	3 cut(s)	19, 96, 268
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	4 cut(s)	71, 111, 234, 277
MslI	CAYNNNNRTG	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	2 cut(s)	10, 54
NlaIII	CATG	2 cut(s)	90, 104
NsiI	ATGCAT	1 cut(s)	248
PagI	TCATGA	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	71, 111, 234, 277
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	10, 54
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	2 cut(s)	68, 117
SfaNI	GCATC	2 cut(s)	172, 177
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	19, 96, 268
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	163
TaqI	TCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	19, 96, 268
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	71, 111, 234, 277
Tru9I	TTAA	4 cut(s)	71, 111, 234, 277
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.