Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

6542248 .. 6545855

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G120800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATGGCTTTGCAAATGCTCCAAGTGGCGCCACTGGCACCACCCACTTCCTCCTCCTCATCTTCTTCTTCTTCTTCTTCTTTTTGGGTCCAAACTCTCCCACTCTGGTTCGGCCAACACCGCTGCCACCATTCTCGGCCTCACCTTGCTCTACAGCACCGCCACTCGTATAAAAGAGCTACACTTTTACTCGTTGCCAAGAAAGATAGGAAATTGCAAGCTTCGTCATCTTCTTCTTCAACTACCCAACAAGACCAGGATGATGATGAAGAGGAAGACGAAGAAGAAAATGACGAAGATGAATCCGACCCCGACCCTGAAGACCTCGAATACGTCAGCCAAATCAAAAGGGTGTTGGAGCTTCTCCGCAAAAACAGAGACATGATTTTCAGTGAGGTTAAGCTCACTGTCATGATTGAGGACCTACGGGAAGTTGAGCGCAGGAGACTCCTTGGCATCGAAGATCCTGATGCCCCTACCAGGGAGGAATTGGGTGAGGTTCTTGAAGAAGTGAATGAAGGAAAAATCCCAAGAAATCGACTTGCTCTTAAACTGCTGGCTGAGGAAATGAATCAATGGCCTAATCTCGAGGTTCAGATTAAACCAGCGAAGAAAAAGCCTGGCAAGTCCCTATACGCGAGAGTGACAGACACTGGTATTGATCTTCAAGAGGCTGCTAAGAGACTGAATATTGATTGGGATACAGCTGCCGAGATTGATGATGCTGAACTCAGTGATGAATCAGAAGTGCCTCCAGTTTTGGGTTATGGAGCACTGTACTTAGTGACGGCTTTCCCAGTCATTATTGGTGTATCAGTGGTATTAATTTTATTTTATAATTCACTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.08

Weight (kDa)

4.72

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
AccB1I	GGYRCC	2 cut(s)	28, 37
AccII	CGCG	1 cut(s)	638
AciI	CCGC	3 cut(s)	121, 160, 367
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	3 cut(s)	480, 481, 761
AgsI	TTSAA	3 cut(s)	240, 506, 668
AjnI	CCWGG	3 cut(s)	255, 479, 619
AluBI	AGCT	5 cut(s)	179, 221, 361, 403, 707
AluI	AGCT	5 cut(s)	179, 221, 361, 403, 707
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	3 cut(s)	372, 439, 676
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	112, 137, 578
ApeKI	GCWGC	3 cut(s)	123, 674, 707
AseI	ATTAAT	1 cut(s)	824
AspLEI	GCGC	2 cut(s)	31, 441
AspS9I	GGNCC	2 cut(s)	88, 421
AsuHPI	GGTGA	2 cut(s)	134, 506
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	88, 421
BanI	GGYRCC	2 cut(s)	28, 37
BbsI	GAAGAC	2 cut(s)	282, 327
Bbv12I	GWGCWC	1 cut(s)	775
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	110, 661, 694
BceAI	ACGGC	1 cut(s)	804
BciT130I	CCWGG	3 cut(s)	257, 481, 621
BciVI	GTATCC	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	372, 439, 676
BfmI	CTRYAG	2 cut(s)	152, 845
BfoI	RGCGCY	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	124, 675, 708
BlsI	GCNGC	3 cut(s)	125, 676, 709
Bme1390I	CCNGG	3 cut(s)	257, 481, 621
Bme18I	GGWCC	2 cut(s)	88, 421
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	88, 421
BmiI	GGNNCC	3 cut(s)	30, 39, 89
BmrFI	CCNGG	3 cut(s)	257, 481, 621
BmrI	ACTGGG	1 cut(s)	791
BmsI	GCATC	3 cut(s)	460, 465, 712
BmuI	ACTGGG	1 cut(s)	791
BpiI	GAAGAC	2 cut(s)	282, 327
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	451, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	480, 481, 761
Bse1I	ACTGG	4 cut(s)	39, 658, 755, 797
BseBI	CCWGG	3 cut(s)	257, 481, 621
BseDI	CCNNGG	2 cut(s)	451, 480
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	3 cut(s)	480, 481, 761
BseMII	CTCAG	2 cut(s)	552, 745
BseNI	ACTGG	4 cut(s)	39, 658, 755, 797
BseRI	GAGGAG	2 cut(s)	43, 46
BseXI	GCAGC	3 cut(s)	110, 661, 694
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	114, 139, 580
BshNI	GGYRCC	2 cut(s)	28, 37
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	480, 481, 761
BsmAI	GTCTC	3 cut(s)	372, 439, 676
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	114, 139, 580
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	2 cut(s)	463, 661
BspACI	CCGC	3 cut(s)	121, 160, 367
BspANI	GGCC	3 cut(s)	114, 139, 580
BspCNI	CTCAG	2 cut(s)	553, 744
BspFNI	CGCG	1 cut(s)	638
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	30, 39, 89
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	28, 37
BsrI	ACTGG	4 cut(s)	39, 658, 755, 797
BssECI	CCNNGG	2 cut(s)	451, 480
BssMI	GATC	2 cut(s)	463, 661
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	3 cut(s)	257, 481, 621
Bst4CI	ACNGT	3 cut(s)	409, 777, 849
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	219, 558
BstDEI	CTNAG	4 cut(s)	561, 678, 731, 781
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 441
BstKTI	GATC	2 cut(s)	466, 664
BstMAI	GTCTC	3 cut(s)	372, 439, 676
BstMBI	GATC	2 cut(s)	463, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 120
BstNI	CCWGG	3 cut(s)	257, 481, 621
BstSCI	CCNGG	3 cut(s)	255, 479, 619
BstSFI	CTRYAG	2 cut(s)	152, 845
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	110, 661, 694
BstV2I	GAAGAC	2 cut(s)	282, 327
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	114, 139, 580
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	7 cut(s)	32, 397, 405, 651, 739, 773, 822
Cac8I	GCNNGC	2 cut(s)	219, 558
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	31, 441
Cfr13I	GGNCC	2 cut(s)	88, 421
Csp6I	GTAC	1 cut(s)	778
CviAII	CATG	2 cut(s)	382, 412
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	4 cut(s)	561, 678, 731, 781
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	2 cut(s)	465, 663
DpnII	GATC	2 cut(s)	463, 661
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	88, 421
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	255, 479, 619
EcoT14I	CCWWGG	1 cut(s)	451
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	385, 415
FaiI	YATR	6 cut(s)	171, 383, 413, 634, 768, 837
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	2 cut(s)	381, 411
Fnu4HI	GCNGC	3 cut(s)	124, 675, 708
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	124, 675, 708
GlaI	GCGC	2 cut(s)	30, 440
GluI	GCNGC	3 cut(s)	124, 675, 708
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	114, 139, 580
HhaI	GCGC	2 cut(s)	31, 441
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	385, 415
Hin6I	GCGC	2 cut(s)	29, 439
HinP1I	GCGC	2 cut(s)	29, 439
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	4 cut(s)	302, 447, 571, 740
HphI	GGTGA	2 cut(s)	134, 506
Hpy188I	TCNGA	3 cut(s)	307, 597, 745
Hpy188III	TCNNGA	5 cut(s)	412, 467, 503, 587, 668
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	3 cut(s)	409, 777, 849
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	13, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 120
HpyF3I	CTNAG	4 cut(s)	561, 678, 731, 781
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	385, 415
HspAI	GCGC	2 cut(s)	29, 439
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	463, 661
LmnI	GCTCC	3 cut(s)	24, 358, 770
Lsp1109I	GCAGC	3 cut(s)	110, 661, 694
LweI	GCATC	3 cut(s)	460, 465, 712
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	643, 784
MalI	GATC	2 cut(s)	465, 663
MboI	GATC	2 cut(s)	463, 661
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	4 cut(s)	212, 488, 825, 838
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	2 cut(s)	330, 336
MseI	TTAA	4 cut(s)	399, 549, 600, 824
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	123, 707
MspR9I	CCNGG	3 cut(s)	257, 481, 621
MvaI	CCWGG	3 cut(s)	257, 481, 621
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	35, 120
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	2 cut(s)	463, 661
NlaIII	CATG	2 cut(s)	385, 415
NlaIV	GGNNCC	3 cut(s)	30, 39, 89
NmeAIII	GCCGAG	2 cut(s)	115, 736
NmuCI	GTSAC	2 cut(s)	643, 784
PaeR7I	CTCGAG	1 cut(s)	587
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	302, 571, 740
PkrI	GCNGC	3 cut(s)	125, 676, 709
PleI	GAGTC	1 cut(s)	441
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	837
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	255, 479, 619
PspGI	CCWGG	3 cut(s)	255, 479, 619
PspN4I	GGNNCC	3 cut(s)	30, 39, 89
PspPI	GGNCC	2 cut(s)	88, 421
PspPPI	RGGWCCY	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	399, 549, 600, 824
SatI	GCNGC	3 cut(s)	124, 675, 708
Sau3AI	GATC	2 cut(s)	463, 661
Sau96I	GGNCC	2 cut(s)	88, 421
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	3 cut(s)	257, 481, 621
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	3 cut(s)	460, 465, 712
SfcI	CTRYAG	2 cut(s)	152, 845
SfoI	GGCGCC	1 cut(s)	30
Sfr274I	CTCGAG	1 cut(s)	587
SinI	GGWCC	2 cut(s)	88, 421
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	212, 488, 825, 838
SsiI	CCGC	3 cut(s)	121, 160, 367
SspDI	GGCGCC	1 cut(s)	28
SspI	AATATT	1 cut(s)	691
StyD4I	CCNGG	3 cut(s)	255, 479, 619
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	3 cut(s)	409, 777, 849
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	327, 459, 538, 588
TasI	AATT	4 cut(s)	212, 488, 825, 838
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	3 cut(s)	302, 571, 740
Tru1I	TTAA	4 cut(s)	399, 549, 600, 824
Tru9I	TTAA	4 cut(s)	399, 549, 600, 824
TscAI	CASTG	7 cut(s)	39, 397, 412, 658, 739, 780, 822
TseFI	GTSAC	2 cut(s)	643, 784
TseI	GCWGC	3 cut(s)	123, 674, 707
Tsp45I	GTSAC	2 cut(s)	643, 784
TspDTI	ATGAA	5 cut(s)	282, 315, 531, 584, 753
TspRI	CASTG	7 cut(s)	39, 397, 412, 658, 739, 780, 822
VpaK11BI	GGWCC	2 cut(s)	88, 421
VspI	ATTAAT	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.