Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16864861 .. 16877309

Gene Structure 12449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCATTCCTCGGAAACCAACCAGACCAAGATGATGATGAAGACGATGACAAAGAAGAAGAAAGTGACCCTACCCCTGACGACCTCGAATACATCGGCCAGATCAAAGGGGTTAAGTTCACCATCGCGATTGAGGACATGAGAGAAGTTGAGCGCAGGAAACTCGTTGGGATCAAATATCCTGATGTTCCCACTAGGGAACAGTTGGCTGCTGTTCTTGAAGAAGTGCATGAGGGAAAAATCCCCAAAAATCGACTTGCACTTAAACTGCTAGCTGAGGAAATGAATCGATGGCCCAATCTAGAGTGGAGTGAATCAATACTACTCGCCGGAAACCCAGATAGGAAGTTGCAAGTTTCTTCTTCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGACCCTACTCCTGACGACCTCGAATACATCAGCCAAATCAAAAGGGTGTTGGAGCTTCTTAAGAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACTATTGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCTGATGCTCCGACCAGGGAGGAGTTGGTTGTTGTTCTTGAAGAAGTGAATGAGGGAAAATCCCCAAAAATTGACTTGCACTTAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.43

Weight (kDa)

4.31

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	571
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	571
AclWI	GGATC	3 cut(s)	179, 590, 603
AcoI	YGGCCR	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	221, 523, 638
AjnI	CCWGG	2 cut(s)	399, 611
AluBI	AGCT	3 cut(s)	275, 493, 535
AluI	AGCT	3 cut(s)	275, 493, 535
Alw26I	GTCTC	2 cut(s)	504, 571
AlwI	GGATC	3 cut(s)	179, 590, 603
AoxI	GGCC	2 cut(s)	97, 293
ApeKI	GCWGC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	112
AsuNHI	GCTAGC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	48, 360
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	131, 285
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	2 cut(s)	401, 613
BcoDI	GTCTC	2 cut(s)	504, 571
BfaI	CTAG	4 cut(s)	195, 272, 302, 688
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	401, 613
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	401, 613
BmsI	GCATC	1 cut(s)	592
BmtI	GCTAGC	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	48, 360
Bpu10I	CCTNAGC	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	10, 583, 612
BseBI	CCWGG	2 cut(s)	401, 613
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	10, 583, 612
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	589, 632
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	99, 295
BshVI	ATCGAT	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	504, 571
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	99, 295
Bsp143I	GATC	3 cut(s)	102, 171, 595
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	571
BspANI	GGCC	2 cut(s)	99, 295
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	597
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	179, 590, 603
BspTI	CTTAAG	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	571
BssECI	CCNNGG	3 cut(s)	10, 583, 612
BssMI	GATC	3 cut(s)	102, 171, 595
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	401, 613
Bst4CI	ACNGT	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	105, 174, 598
BstMAI	GTCTC	2 cut(s)	504, 571
BstMBI	GATC	3 cut(s)	102, 171, 595
BstNI	CCWGG	2 cut(s)	401, 613
BstSCI	CCNGG	2 cut(s)	399, 611
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	2 cut(s)	48, 360
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	99, 295
BsuTUI	ATCGAT	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	109
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	289
CviAII	CATG	3 cut(s)	139, 230, 514
CviJI	RGCY	7 cut(s)	99, 209, 275, 295, 471, 493, 535
CviKI_1	RGCY	7 cut(s)	99, 209, 275, 295, 471, 493, 535
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	104, 173, 597
DpnII	GATC	3 cut(s)	102, 171, 595
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	399, 611
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	3 cut(s)	142, 233, 517
FaiI	YATR	4 cut(s)	140, 231, 515, 557
FatI	CATG	3 cut(s)	138, 229, 513
Fnu4HI	GCNGC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	4 cut(s)	195, 272, 302, 688
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	99, 295
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	142, 233, 517
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	286, 314, 579
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	14, 609
Hpy188III	TCNNGA	7 cut(s)	127, 182, 218, 302, 449, 599, 635
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	229, 260, 352, 676
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	142, 233, 517
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	102, 171, 595
LmnI	GCTCC	2 cut(s)	490, 610
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	4 cut(s)	195, 272, 302, 688
MaeIII	GTNAC	2 cut(s)	65, 437
MalI	GATC	3 cut(s)	104, 173, 597
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	3 cut(s)	102, 171, 595
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	2 cut(s)	468, 632
MseI	TTAA	5 cut(s)	114, 264, 498, 531, 680
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	401, 613
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	401, 613
MvnI	CGCG	1 cut(s)	128
NdeII	GATC	3 cut(s)	102, 171, 595
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	142, 233, 517
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	65, 437
NruI	TCGCGA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	286, 314
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	399, 611
PspGI	CCWGG	2 cut(s)	399, 611
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	595
RruI	TCGCGA	1 cut(s)	128
SaqAI	TTAA	5 cut(s)	114, 264, 498, 531, 680
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	102, 171, 595
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	2 cut(s)	401, 613
SetI	ASST	6 cut(s)	87, 277, 459, 495, 531, 537
SfaNI	GCATC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	1 cut(s)	666
SsiI	CCGC	1 cut(s)	571
SspMI	CTAG	4 cut(s)	195, 272, 302, 688
StyD4I	CCNGG	2 cut(s)	399, 611
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	87, 253, 289, 459
TasI	AATT	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	286, 314
Tru1I	TTAA	5 cut(s)	114, 264, 498, 531, 680
Tru9I	TTAA	5 cut(s)	114, 264, 498, 531, 680
TseFI	GTSAC	2 cut(s)	65, 437
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	65, 437
TspDTI	ATGAA	3 cut(s)	54, 299, 423
Vha464I	CTTAAG	1 cut(s)	497
XbaI	TCTAGA	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XspI	CTAG	4 cut(s)	195, 272, 302, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.