Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

32212833 .. 32215587

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1224400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTTTGCAAATTCTCCAAGTGGCGCCACTGCCGCCACTCACTTCCTCCTCCTCATCTTCTTGTCGGGTCCAGACCCTCCCACTCTGGCTCAACCAACGCAACTGCCACTGCCGCCACTCGCGGCCTCAGCTTGCTCTCCCGCCCCGCAGCTCGTACAAAAGAACCGCACTCTCGCTCCTCGGTAGGAAAGATAGGAAATTGCAAGCTTCTTCATCATCTTCTTCAACTACCCAACAAGACCAGGATGACGAAGAAGAATATCAAGACGACGAAGGATATGAGGAAGATGAATTGGACCCTGACCCGGAAGACCTCGAATACGTTGGCCAAATCAAAAGGGTGTTGGAGCTTCTGCGGAAGAACAGAGACATGATTTTCAGTGAGGTTAAGCTCACTGTTATGATTGAGGACCTGCGAGAAGTTGAGCGCAGGAGACTCCTCGGAATCGAAGATCCTGATGCCCCTACTAGGGAGGAATTGGCCGATGTTCTTGAGGAAGTGAATGAAGGAAAAATCCCAAAAAATCGACTTGCTCTTAAACTGCTGGCAGCGGAAATGAATCAATGGCCTAATCTAGAGGTTCAGATTACACCAGCGAAGAAAAAGCCTGGTAAGTCCCTATATGCAAGAGTGACAGACACTGGTATTGATCTTCAAGAGGCTGCAAAGAGACTGAAGATTGATTGGGATACGGCTGCTGAGATTGATGATGGTGATCTTAAAGATGAAAACGAAGTGCCGTCGGGCTATGGCGCGCTGTACTTAGTCACAGCTTTCCCCGTCATTATTGGTGTATCAGTGGTATTAATTTTGTTTTACAATTCGCTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.45

Weight (kDa)

4.77

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	124, 758
AciI	CCGC	8 cut(s)	35, 115, 124, 143, 148, 168, 358, 554
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	328, 483
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	158, 764
AfiI	CCNNNNNNNGG	3 cut(s)	307, 471, 472
AgsI	TTSAA	2 cut(s)	228, 659
AjnI	CCWGG	2 cut(s)	243, 610
AluBI	AGCT	6 cut(s)	133, 153, 209, 352, 394, 776
AluI	AGCT	6 cut(s)	133, 153, 209, 352, 394, 776
Alw26I	GTCTC	3 cut(s)	363, 430, 667
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	4 cut(s)	125, 328, 483, 569
ApeKI	GCWGC	4 cut(s)	150, 551, 665, 698
ApoI	RAATTY	1 cut(s)	12
AseI	ATTAAT	1 cut(s)	809
AspLEI	GCGC	4 cut(s)	28, 432, 758, 760
AspS9I	GGNCC	3 cut(s)	70, 298, 412
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	3 cut(s)	70, 298, 412
BalI	TGGCCA	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	162, 563, 652, 685
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	2 cut(s)	711, 727
BciT130I	CCWGG	2 cut(s)	245, 612
BciVI	GTATCC	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	363, 430, 667
BfaI	CTAG	2 cut(s)	471, 578
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	7 cut(s)	35, 115, 125, 151, 552, 666, 699
BlsI	GCNGC	7 cut(s)	36, 116, 126, 152, 553, 667, 700
Bme1390I	CCNGG	3 cut(s)	245, 308, 612
Bme18I	GGWCC	3 cut(s)	70, 298, 412
BmgT120I	GGNCC	3 cut(s)	70, 298, 412
BmiI	GGNNCC	3 cut(s)	27, 71, 300
BmrFI	CCNGG	3 cut(s)	245, 308, 612
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	815
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	181, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 471, 472
Bse1I	ACTGG	2 cut(s)	649, 832
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	245, 612
BseDI	CCNNGG	2 cut(s)	181, 442
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	3 cut(s)	307, 471, 472
BseMII	CTCAG	2 cut(s)	143, 693
BseNI	ACTGG	2 cut(s)	649, 832
BsePI	GCGCGC	1 cut(s)	756
BseRI	GAGGAG	4 cut(s)	40, 43, 170, 431
BseXI	GCAGC	4 cut(s)	162, 563, 652, 685
Bsh1236I	CGCG	2 cut(s)	124, 758
BshFI	GGCC	4 cut(s)	127, 330, 485, 571
BshNI	GGYRCC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	3 cut(s)	307, 471, 472
BsmAI	GTCTC	3 cut(s)	363, 430, 667
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	4 cut(s)	127, 330, 485, 571
Bsp143I	GATC	3 cut(s)	454, 652, 718
BspACI	CCGC	8 cut(s)	35, 115, 124, 143, 148, 168, 358, 554
BspANI	GGCC	4 cut(s)	127, 330, 485, 571
BspCNI	CTCAG	2 cut(s)	142, 694
BspFNI	CGCG	2 cut(s)	124, 758
BspLI	GGNNCC	3 cut(s)	27, 71, 300
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	649, 832
BssECI	CCNNGG	2 cut(s)	181, 442
BssHII	GCGCGC	1 cut(s)	756
BssMI	GATC	3 cut(s)	454, 652, 718
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	245, 612
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	135, 207, 549, 758
BstDEI	CTNAG	3 cut(s)	129, 702, 766
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	2 cut(s)	124, 758
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	4 cut(s)	28, 432, 758, 760
BstKTI	GATC	3 cut(s)	457, 655, 721
BstMAI	GTCTC	3 cut(s)	363, 430, 667
BstMBI	GATC	3 cut(s)	454, 652, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 114, 130
BstNI	CCWGG	2 cut(s)	245, 612
BstSCI	CCNGG	3 cut(s)	243, 306, 610
BstUI	CGCG	2 cut(s)	124, 758
BstV1I	GCAGC	4 cut(s)	162, 563, 652, 685
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	4 cut(s)	127, 330, 485, 571
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	2 cut(s)	29, 109
BtsIMutI	CAGTG	6 cut(s)	29, 109, 388, 396, 642, 807
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	4 cut(s)	135, 207, 549, 758
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	4 cut(s)	28, 432, 758, 760
Cfr13I	GGNCC	3 cut(s)	70, 298, 412
Csp6I	GTAC	2 cut(s)	157, 763
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	2 cut(s)	157, 763
DdeI	CTNAG	3 cut(s)	129, 702, 766
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	3 cut(s)	456, 654, 720
DpnII	GATC	3 cut(s)	454, 652, 718
EaeI	YGGCCR	2 cut(s)	328, 483
Eco47I	GGWCC	3 cut(s)	70, 298, 412
Eco57I	CTGAAG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	243, 610
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	282, 374, 404, 625, 627, 753
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	1 cut(s)	372
FauI	CCCGC	2 cut(s)	150, 155
Fnu4HI	GCNGC	7 cut(s)	35, 115, 125, 151, 552, 666, 699
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	7 cut(s)	35, 115, 125, 151, 552, 666, 699
FspBI	CTAG	2 cut(s)	471, 578
GlaI	GCGC	4 cut(s)	27, 431, 757, 759
GluI	GCNGC	7 cut(s)	35, 115, 125, 151, 552, 666, 699
GsuI	CTGGAG	1 cut(s)	815
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	127, 330, 485, 571
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	4 cut(s)	28, 432, 758, 760
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	4 cut(s)	26, 430, 756, 758
HinP1I	GCGC	4 cut(s)	26, 430, 756, 758
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	438, 447, 562
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	728
Hpy188I	TCNGA	2 cut(s)	446, 588
Hpy188III	TCNNGA	6 cut(s)	73, 266, 458, 494, 578, 659
Hpy99I	CGWCG	2 cut(s)	275, 748
HpyAV	CCTTC	2 cut(s)	269, 503
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	10, 205, 629, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 114, 130
HpyF3I	CTNAG	3 cut(s)	129, 702, 766
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	4 cut(s)	26, 430, 756, 758
KasI	GGCGCC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	454, 652, 718
LmnI	GCTCC	3 cut(s)	183, 349, 834
Lsp1109I	GCAGC	4 cut(s)	162, 563, 652, 685
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	471, 578
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	634, 769
MalI	GATC	3 cut(s)	456, 654, 720
MboI	GATC	3 cut(s)	454, 652, 718
MflI	RGATCY	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	6 cut(s)	12, 200, 293, 479, 810, 823
MluNI	TGGCCA	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	4 cut(s)	390, 540, 723, 809
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	245, 308, 612
MvaI	CCWGG	2 cut(s)	245, 612
MvnI	CGCG	2 cut(s)	124, 758
MwoI	GCNNNNNNNGC	3 cut(s)	34, 114, 130
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	454, 652, 718
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	3 cut(s)	27, 71, 300
NmuCI	GTSAC	2 cut(s)	634, 769
PauI	GCGCGC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	447, 562
PkrI	GCNGC	7 cut(s)	36, 116, 126, 152, 553, 667, 700
PleI	GAGTC	1 cut(s)	432
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	243, 610
PspGI	CCWGG	2 cut(s)	243, 610
PspN4I	GGNNCC	3 cut(s)	27, 71, 300
PspPI	GGNCC	3 cut(s)	70, 298, 412
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	454
PteI	GCGCGC	1 cut(s)	756
RsaI	GTAC	2 cut(s)	158, 764
RsaNI	GTAC	2 cut(s)	157, 763
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	390, 540, 723, 809
SatI	GCNGC	7 cut(s)	35, 115, 125, 151, 552, 666, 699
Sau3AI	GATC	3 cut(s)	454, 652, 718
Sau96I	GGNCC	3 cut(s)	70, 298, 412
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	245, 308, 612
SfaNI	GCATC	1 cut(s)	451
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	3 cut(s)	70, 298, 412
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	12, 200, 293, 479, 810, 823
SsiI	CCGC	8 cut(s)	35, 115, 124, 143, 148, 168, 358, 554
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	471, 578
StyD4I	CCNGG	3 cut(s)	243, 306, 610
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	318, 450, 529
TasI	AATT	6 cut(s)	12, 200, 293, 479, 810, 823
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	3 cut(s)	37, 117, 127
TfiI	GAWTC	2 cut(s)	447, 562
Tru1I	TTAA	4 cut(s)	390, 540, 723, 809
Tru9I	TTAA	4 cut(s)	390, 540, 723, 809
TscAI	CASTG	6 cut(s)	36, 116, 388, 403, 649, 807
TseFI	GTSAC	2 cut(s)	634, 769
TseI	GCWGC	4 cut(s)	150, 551, 665, 698
Tsp45I	GTSAC	2 cut(s)	634, 769
TspDTI	ATGAA	5 cut(s)	204, 306, 522, 575, 744
TspRI	CASTG	6 cut(s)	36, 116, 388, 403, 649, 807
VpaK11BI	GGWCC	3 cut(s)	70, 298, 412
VspI	ATTAAT	1 cut(s)	809
XapI	RAATTY	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	577
XspI	CTAG	2 cut(s)	471, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.