Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

81509 .. 84632

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001784.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaatcaatggcccaatctagaggctcagattaaaccagcaaagaaaaagccaggaaaatccctatatgcaagagtcacagacactggtattgatcttaaaaaggccgctaatagactgaacattgattgggatacagctgcagagattgatgatgctgatgttaaggatgagtcagatgtgccttcagttgtggttaagttcaccatcacgattgaggacatgagagaagttgagtgcaggaaacttgttggcatcaaagatcctgatgctcccaccagggaacagttggctggtgttcttgaagaagtccctccttttgagtggcgccactcacaccacgcgcttcctaagaagaccagagacatgattttcaatgaggttaagcttactattgcgattgaggacataagagaagttgagcggaggagactccttggcattgaggatcctgatgctccgaccagggaagagttggctgctgttcttgaagaagttaatgaaggaaaaatccccaaaaatcgacttgcacttaaactgctagctgaggaaatgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.17

Weight (kDa)

5.1

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	424
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	108, 424
AclWI	GGATC	3 cut(s)	257, 443, 456
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	305, 376, 491
AjnI	CCWGG	3 cut(s)	52, 278, 464
AluBI	AGCT	3 cut(s)	140, 388, 545
AluI	AGCT	3 cut(s)	140, 388, 545
Alw26I	GTCTC	2 cut(s)	357, 424
AlwI	GGATC	3 cut(s)	257, 443, 456
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	11, 105
ApeKI	GCWGC	2 cut(s)	140, 479
AspLEI	GCGC	2 cut(s)	330, 346
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	127, 466
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	54, 280, 466
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	357, 424
BfaI	CTAG	2 cut(s)	20, 542
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	108, 141, 480
BlsI	GCNGC	3 cut(s)	109, 142, 481
Bme1390I	CCNGG	3 cut(s)	54, 280, 466
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	329, 450
BmrFI	CCNGG	3 cut(s)	54, 280, 466
BmsI	GCATC	4 cut(s)	145, 259, 264, 445
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	279, 436, 465
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	3 cut(s)	54, 280, 466
BseDI	CCNNGG	3 cut(s)	279, 436, 465
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	41, 537
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	127, 466
BsgI	GTGCAG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	13, 107
BshNI	GGYRCC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	357, 424
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	13, 107
Bsp143I	GATC	3 cut(s)	94, 262, 448
BspACI	CCGC	2 cut(s)	108, 424
BspANI	GGCC	2 cut(s)	13, 107
BspCNI	CTCAG	2 cut(s)	40, 538
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	329, 450
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	257, 443, 456
BspT107I	GGYRCC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	279, 436, 465
BssMI	GATC	3 cut(s)	94, 262, 448
BssNI	GRCGYC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	3 cut(s)	54, 280, 466
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	27, 351, 546
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	330, 346
BstKTI	GATC	3 cut(s)	97, 265, 451
BstMAI	GTCTC	2 cut(s)	357, 424
BstMBI	GATC	3 cut(s)	94, 262, 448
BstNI	CCWGG	3 cut(s)	54, 280, 466
BstSCI	CCNGG	3 cut(s)	52, 278, 464
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	127, 466
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	262, 448
BstYI	RGATCY	2 cut(s)	262, 448
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	13, 107
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	2 cut(s)	330, 346
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	2 cut(s)	223, 367
CviJI	RGCY	9 cut(s)	13, 26, 52, 107, 140, 293, 388, 479, 545
CviKI_1	RGCY	9 cut(s)	13, 26, 52, 107, 140, 293, 388, 479, 545
DdeI	CTNAG	3 cut(s)	27, 351, 546
DinI	GGCGCC	1 cut(s)	329
DpnI	GATC	3 cut(s)	96, 264, 450
DpnII	GATC	3 cut(s)	94, 262, 448
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	52, 278, 464
EcoT14I	CCWWGG	1 cut(s)	436
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	2 cut(s)	226, 370
FaiI	YATR	5 cut(s)	67, 69, 224, 368, 410
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	222, 366
Fnu4HI	GCNGC	3 cut(s)	108, 141, 480
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	108, 141, 480
FspBI	CTAG	2 cut(s)	20, 542
GlaI	GCGC	2 cut(s)	329, 345
GluI	GCNGC	3 cut(s)	108, 141, 480
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	13, 107
HhaI	GCGC	2 cut(s)	330, 346
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	226, 370
Hin6I	GCGC	2 cut(s)	328, 344
HinP1I	GCGC	2 cut(s)	328, 344
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	4, 75, 173, 432
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	30, 178, 462
Hpy188III	TCNNGA	6 cut(s)	20, 211, 266, 302, 452, 488
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	195, 497
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	71, 143, 240, 530
HpyF3I	CTNAG	3 cut(s)	27, 351, 546
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	226, 370
HspAI	GCGC	2 cut(s)	328, 344
KasI	GGCGCC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	94, 262, 448
LmnI	GCTCC	2 cut(s)	277, 463
Lsp1109I	GCAGC	2 cut(s)	127, 466
LweI	GCATC	4 cut(s)	145, 259, 264, 445
MaeI	CTAG	2 cut(s)	20, 542
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	96, 264, 450
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	3 cut(s)	94, 262, 448
MboII	GAAGA	4 cut(s)	317, 367, 482, 503
MflI	RGATCY	2 cut(s)	262, 448
MluCI	AATT	1 cut(s)	556
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	3 cut(s)	84, 182, 426
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	8 cut(s)	16, 211, 324, 373, 397, 420, 439, 541
MseI	TTAA	7 cut(s)	33, 99, 165, 198, 384, 498, 534
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	3 cut(s)	54, 280, 466
MvaI	CCWGG	3 cut(s)	54, 280, 466
MvnI	CGCG	1 cut(s)	344
NarI	GGCGCC	1 cut(s)	328
NdeII	GATC	3 cut(s)	94, 262, 448
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	2 cut(s)	226, 370
NlaIV	GGNNCC	2 cut(s)	329, 450
NmuCI	GTSAC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	109, 142, 481
PleI	GAGTC	3 cut(s)	83, 181, 426
PluTI	GGCGCC	1 cut(s)	331
PpsI	GAGTC	3 cut(s)	83, 181, 426
Psp6I	CCWGG	3 cut(s)	52, 278, 464
PspGI	CCWGG	3 cut(s)	52, 278, 464
PspN4I	GGNNCC	2 cut(s)	329, 450
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	262, 448
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	7 cut(s)	33, 99, 165, 198, 384, 498, 534
SatI	GCNGC	3 cut(s)	108, 141, 480
Sau3AI	GATC	3 cut(s)	94, 262, 448
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	3 cut(s)	84, 182, 426
ScrFI	CCNGG	3 cut(s)	54, 280, 466
SetI	ASST	4 cut(s)	142, 384, 390, 547
SfaNI	GCATC	4 cut(s)	145, 259, 264, 445
SfcI	CTRYAG	1 cut(s)	141
SfoI	GGCGCC	1 cut(s)	329
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	2 cut(s)	108, 424
SspDI	GGCGCC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	20, 542
StyD4I	CCNGG	3 cut(s)	52, 278, 464
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	523
TasI	AATT	1 cut(s)	556
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	7 cut(s)	33, 99, 165, 198, 384, 498, 534
Tru9I	TTAA	7 cut(s)	33, 99, 165, 198, 384, 498, 534
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	140, 479
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	17, 516
TspRI	CASTG	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 472
XspI	CTAG	2 cut(s)	20, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.