Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

9930649 .. 9937347

Gene Structure 6699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

ATGGGAGAACCATGGATATGGACAAGTGTGGAAGACGGCCAGGCAACTAGCTCGACCTCGGAGATTCATGAAGTTGAGCCTATGCTCACCATTGGGATTGGGGACACAAGAGAAGTTGAGCGCAAGAAACTCCTAGGCATCGAAGACCCTGATGCTCCCACCAGGGAAGAGTTGGTTGTTGTTCTTGAAGAAAACATGAGTTGTGATACATGGGACCGCTCAAGCGAGCAATTGTTGTTTGAGTCTGAAATTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.52

Weight (kDa)

4.05

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AciI	CCGC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	39, 161
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
AoxI	GGCC	1 cut(s)	37
AspA2I	CCTAGG	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	214
AvrII	CCTAGG	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	39, 150
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	2 cut(s)	41, 163
BfaI	CTAG	2 cut(s)	48, 134
BlnI	CCTAGG	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	41, 163
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	41, 163
BmsI	GCATC	2 cut(s)	142, 147
BpiI	GAAGAC	2 cut(s)	39, 150
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	11, 57, 133, 162
BseBI	CCWGG	2 cut(s)	41, 163
BseDI	CCNNGG	4 cut(s)	11, 57, 133, 162
BshFI	GGCC	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	116, 227
BsmFI	GGGAC	2 cut(s)	116, 227
BsnI	GGCC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	219
BssECI	CCNNGG	4 cut(s)	11, 57, 133, 162
BssT1I	CCWWGG	2 cut(s)	11, 133
Bst2UI	CCWGG	2 cut(s)	41, 163
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	123
BstNI	CCWGG	2 cut(s)	41, 163
BstSCI	CCNGG	2 cut(s)	39, 161
BstV2I	GAAGAC	2 cut(s)	39, 150
BstXI	CCANNNNNNTGG	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	227
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	214
CviAII	CATG	4 cut(s)	12, 68, 196, 210
CviJI	RGCY	3 cut(s)	39, 51, 79
CviKI_1	RGCY	3 cut(s)	39, 51, 79
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	11, 133
Eco47I	GGWCC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	39, 161
EcoT14I	CCWWGG	2 cut(s)	11, 133
ErhI	CCWWGG	2 cut(s)	11, 133
FaeI	CATG	4 cut(s)	15, 71, 199, 213
FaiI	YATR	6 cut(s)	13, 19, 69, 83, 197, 211
FaqI	GGGAC	2 cut(s)	116, 227
FatI	CATG	4 cut(s)	11, 67, 195, 209
FspBI	CTAG	2 cut(s)	48, 134
GlaI	GCGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	15, 71, 199, 213
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	64, 242
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	61, 247
Hpy188III	TCNNGA	2 cut(s)	68, 185
Hsp92II	CATG	4 cut(s)	15, 71, 199, 213
HspAI	GCGC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	26, 53, 148, 162, 175
LweI	GCATC	2 cut(s)	142, 147
MaeI	CTAG	2 cut(s)	48, 134
MbiI	CCGCTC	1 cut(s)	219
MboII	GAAGA	4 cut(s)	44, 155, 179, 200
MfeI	CAATTG	1 cut(s)	230
MluCI	AATT	2 cut(s)	230, 249
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	67
MslI	CAYNNNNRTG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	41, 163
MunI	CAATTG	1 cut(s)	230
MvaI	CCWGG	2 cut(s)	41, 163
NcoI	CCATGG	1 cut(s)	11
NlaIII	CATG	4 cut(s)	15, 71, 199, 213
NlaIV	GGNNCC	1 cut(s)	215
PagI	TCATGA	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	39, 161
PspGI	CCWGG	2 cut(s)	39, 161
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	41, 163
SetI	ASST	2 cut(s)	53, 59
SfaNI	GCATC	2 cut(s)	142, 147
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	230, 249
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	48, 134
StyD4I	CCNGG	2 cut(s)	39, 161
StyI	CCWWGG	2 cut(s)	11, 133
TaqI	TCGA	2 cut(s)	53, 141
TasI	AATT	2 cut(s)	230, 249
TfiI	GAWTC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	56, 84
VpaK11BI	GGWCC	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	48, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.