Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16241846 .. 16244966

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCCCAATCTGGAGGTTCAGTTAAACCAGCAAAGAGAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACTGGTATTGATCTTAAAGAGGCTGCTAAGAGACTGAACATTGATTGGAATACAGCTGCAGAGATTGATGATGCTGATGTTAAGGATGAGTCAGATGTGCATTCAGTTGTGGTTAAGAATCACCATCGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.56

Weight (kDa)

8.07

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	98, 131
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	85, 118
BccI	CCATC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	99, 132
BlsI	GCNGC	2 cut(s)	100, 133
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	85, 118
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	85, 118
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	4 cut(s)	5, 43, 98, 131
CviKI_1	RGCY	4 cut(s)	5, 43, 98, 131
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	43
FaiI	YATR	2 cut(s)	58, 60
Fnu4HI	GCNGC	2 cut(s)	99, 132
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	99, 132
GluI	GCNGC	2 cut(s)	99, 132
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	66, 164, 193
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	62, 134, 175
HpyF3I	CTNAG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	30, 42, 57, 63
Lsp1109I	GCAGC	2 cut(s)	85, 118
LweI	GCATC	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MfeI	CAATTG	1 cut(s)	205
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	2 cut(s)	75, 173
MnlI	CCTC	2 cut(s)	8, 88
MseI	TTAA	4 cut(s)	24, 90, 156, 189
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	100, 133
PleI	GAGTC	2 cut(s)	74, 172
PpsI	GAGTC	2 cut(s)	74, 172
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	24, 90, 156, 189
SatI	GCNGC	2 cut(s)	99, 132
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	75, 173
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	2 cut(s)	19, 133
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	132
SgeI	CNNG	6 cut(s)	24, 41, 56, 57, 75, 90
Sse9I	AATT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	43
TasI	AATT	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	24, 90, 156, 189
Tru9I	TTAA	4 cut(s)	24, 90, 156, 189
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	98, 131
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.