Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

30165011 .. 30167377

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTTTCGATCGATGTCACCAAATCTTGCCTTTATTCAATTAGCCAGAATGTTAAGCTCACCATCGAGATTGGGGACACGAGAAAGATGAGTGCAAAGCGACTCCTTGGCATCAAAGACCCTGATGCTCCCACCAGGGAAGAGTTGGCTGCTGTTCTTGAAGAAGTCCCTTCTTTTAAGTTCCTATGCATAATGCTCACTGTTTTCTTGATATTTGGCACTCCAATCAGATCTTTGCCAATGAGTCACTTGAATATTACAAAAATTGTGCAGGCATGCTGTAAAGGTACAGGACATGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.15

Weight (kDa)

8.41

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	39, 161, 253
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	10, 52
BauI	CACGAG	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	115, 120
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	106, 135
BseBI	CCWGG	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	106, 135
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	89, 152
BsmFI	GGGAC	2 cut(s)	89, 152
Bsp143I	GATC	2 cut(s)	9, 230
BspDI	ATCGAT	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	106, 135
BssMI	GATC	2 cut(s)	9, 230
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	273, 277
BstKTI	GATC	2 cut(s)	12, 233
BstMBI	GATC	2 cut(s)	9, 230
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	12
BsuTUI	ATCGAT	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	273, 277
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	276, 296
CviJI	RGCY	3 cut(s)	45, 58, 149
CviKI_1	RGCY	3 cut(s)	45, 58, 149
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	2 cut(s)	11, 232
DpnII	GATC	2 cut(s)	9, 230
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	279, 299
FaiI	YATR	4 cut(s)	187, 191, 277, 297
FaqI	GGGAC	2 cut(s)	89, 152
FatI	CATG	2 cut(s)	275, 295
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	279, 299
HinfI	GANTC	2 cut(s)	102, 244
HphI	GGTGA	2 cut(s)	10, 52
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	3 cut(s)	67, 158, 208
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	95, 189, 271
Hsp92II	CATG	2 cut(s)	279, 299
Kzo9I	GATC	2 cut(s)	9, 230
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	59, 121, 135, 148, 257, 276
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	115, 120
MaeIII	GTNAC	2 cut(s)	16, 245
MalI	GATC	2 cut(s)	11, 232
MboI	GATC	2 cut(s)	9, 230
MboII	GAAGA	2 cut(s)	152, 173
MflI	RGATCY	1 cut(s)	230
MluCI	AATT	2 cut(s)	39, 264
MlyI	GAGTC	2 cut(s)	96, 253
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	3 cut(s)	54, 177, 304
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	9, 230
NlaIII	CATG	2 cut(s)	279, 299
NmuCI	GTSAC	2 cut(s)	16, 245
NsiI	ATGCAT	1 cut(s)	191
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	151
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	2 cut(s)	96, 252
PpsI	GAGTC	2 cut(s)	96, 252
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	54, 177, 304
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	9, 230
SchI	GAGTC	2 cut(s)	96, 253
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	2 cut(s)	60, 289
SfaNI	GCATC	2 cut(s)	115, 120
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	39, 264
SspI	AATATT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	8, 12, 66
TasI	AATT	2 cut(s)	39, 264
Tru1I	TTAA	3 cut(s)	54, 177, 304
Tru9I	TTAA	3 cut(s)	54, 177, 304
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	16, 245
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	2 cut(s)	16, 245
TspRI	CASTG	1 cut(s)	205
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.