Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007239.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

4005 .. 8816

Gene Structure 4812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007239.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggtgataacgagttcgcatatgctccaggtggcgccactcgcatcacacgcttcctcctcatcttcttctttgtcccaaaccctcccagtctggttcaaccattgccattgccaccctttacggcctcagctcactctccgccaccgcccaaggcccacaatactactcgccggaaacccagataggttgcaagtttcatcatcttcgtcgtcatcttggactacccaacaagaccaggacgatgaagaagaagaagaagatcaagacaatgatcaagaagaagaagaagaaagtgaccctacccctgacgacctcgaatacatcagccaaatcaaaagggttaagcttactattgcgattgaggacataagagaagttgagaggaggagactccttggcattgaggatcccgatgctccgaccagagaagagttggctgctgttcttgaagaagttaagcttacttttgcgattgaggacataagagaagttgagcggaggagactccttggcattgaggatcctgatgctccgaccagggaagagtttgctgctgttcttgaagaatattgtcttattcaatcaaagatttacatgaatgcaatgaagctaggatcaaatggttcagctaaaccagcaaagagaaagccaggaaaatcactatatgcaagagtcacagacactggtattgatcttaaagaggctgctaagagactgaacattgcttggaatacagctgcagagattgacgatgctgatgttaaggatgagtcaggcgtgcattcagttgtgaagttgagctggaaactcgttggcatcaaagatccggatgctcccaccaggaaacagttggctgctgttcttgaagaagtccctccttttaagttcctggatttagatcctctccttgctagttttggcccttggtttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.05

Weight (kDa)

4.78

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	499
AccIII	TCCGGA	1 cut(s)	829
AciI	CCGC	3 cut(s)	142, 148, 499
AclWI	GGATC	7 cut(s)	404, 417, 518, 531, 625, 821, 896
AcyI	GRCGYC	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	100, 452, 566, 584, 869
AjnI	CCWGG	6 cut(s)	27, 237, 539, 652, 842, 891
AluBI	AGCT	7 cut(s)	133, 349, 463, 613, 632, 740, 804
AluI	AGCT	7 cut(s)	133, 349, 463, 613, 632, 740, 804
Alw26I	GTCTC	3 cut(s)	385, 499, 709
AlwI	GGATC	7 cut(s)	404, 417, 518, 531, 625, 821, 896
AlwNI	CAGNNNCTG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	829
AoxI	GGCC	3 cut(s)	125, 155, 922
ApeKI	GCWGC	5 cut(s)	440, 554, 707, 740, 857
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	156, 923
AsuHPI	GGTGA	1 cut(s)	16
BamHI	GGATCC	2 cut(s)	409, 523
BanI	GGYRCC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	427, 541, 694, 727, 844
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	6 cut(s)	29, 239, 541, 654, 844, 893
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	3 cut(s)	385, 499, 709
BfaI	CTAG	2 cut(s)	614, 915
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	5 cut(s)	441, 555, 708, 741, 858
BlsI	GCNGC	5 cut(s)	442, 556, 709, 742, 859
Bme1390I	CCNGG	6 cut(s)	29, 239, 541, 654, 844, 893
BmgT120I	GGNCC	2 cut(s)	156, 923
BmiI	GGNNCC	3 cut(s)	36, 411, 525
BmrFI	CCNGG	6 cut(s)	29, 239, 541, 654, 844, 893
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	6 cut(s)	53, 406, 520, 745, 823, 828
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	152, 397, 511, 540, 926
BsaWI	WCCGGW	1 cut(s)	829
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	2 cut(s)	89, 691
Bse3DI	GCAATG	4 cut(s)	103, 109, 612, 723
Bse8I	GATNNNNATC	1 cut(s)	900
BseAI	TCCGGA	1 cut(s)	829
BseBI	CCWGG	6 cut(s)	29, 239, 541, 654, 844, 893
BseDI	CCNNGG	5 cut(s)	152, 397, 511, 540, 926
BseGI	GGATG	2 cut(s)	775, 838
BseJI	GATNNNNATC	1 cut(s)	900
BseMI	GCAATG	4 cut(s)	103, 109, 612, 723
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	89, 691
BseRI	GAGGAG	4 cut(s)	49, 400, 403, 517
BseXI	GCAGC	5 cut(s)	427, 541, 694, 727, 844
BshFI	GGCC	3 cut(s)	127, 157, 924
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	174, 830
BslFI	GGGAC	2 cut(s)	61, 860
BsmAI	GTCTC	3 cut(s)	385, 499, 709
BsmFI	GGGAC	2 cut(s)	61, 860
BsmI	GAATGC	2 cut(s)	607, 784
BsnI	GGCC	3 cut(s)	127, 157, 924
Bsp13I	TCCGGA	1 cut(s)	829
Bsp143I	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
BspACI	CCGC	3 cut(s)	142, 148, 499
BspANI	GGCC	3 cut(s)	127, 157, 924
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	36, 411, 525
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	7 cut(s)	404, 417, 518, 531, 625, 821, 896
BspT107I	GGYRCC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	499
BsrDI	GCAATG	4 cut(s)	103, 109, 612, 723
BsrI	ACTGG	2 cut(s)	89, 691
BssECI	CCNNGG	5 cut(s)	152, 397, 511, 540, 926
BssMI	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	4 cut(s)	152, 397, 511, 926
Bst2UI	CCWGG	6 cut(s)	29, 239, 541, 654, 844, 893
Bst4CI	ACNGT	1 cut(s)	852
Bst6I	CTCTTC	2 cut(s)	426, 540
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	2 cut(s)	129, 711
BstF5I	GGATG	2 cut(s)	775, 838
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	8 cut(s)	265, 277, 412, 526, 620, 697, 829, 904
BstMAI	GTCTC	3 cut(s)	385, 499, 709
BstMBI	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 638
BstNI	CCWGG	6 cut(s)	29, 239, 541, 654, 844, 893
BstSCI	CCNGG	6 cut(s)	27, 237, 539, 652, 842, 891
BstSFI	CTRYAG	1 cut(s)	741
BstV1I	GCAGC	5 cut(s)	427, 541, 694, 727, 844
BstX2I	RGATCY	4 cut(s)	409, 523, 826, 901
BstYI	RGATCY	4 cut(s)	409, 523, 826, 901
BsuRI	GGCC	3 cut(s)	127, 157, 924
BtsCI	GGATG	2 cut(s)	775, 838
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	782
CaiI	CAGNNNCTG	1 cut(s)	686
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	156, 923
CviAII	CATG	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	129, 711
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	8 cut(s)	264, 276, 411, 525, 619, 696, 828, 903
DpnII	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
Eam1104I	CTCTTC	2 cut(s)	426, 540
EarI	CTCTTC	2 cut(s)	426, 540
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	4 cut(s)	152, 397, 511, 926
EcoRII	CCWGG	6 cut(s)	27, 237, 539, 652, 842, 891
EcoT14I	CCWWGG	4 cut(s)	152, 397, 511, 926
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	4 cut(s)	152, 397, 511, 926
FaeI	CATG	1 cut(s)	601
FaiI	YATR	7 cut(s)	21, 23, 371, 485, 599, 667, 669
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	2 cut(s)	61, 860
FatI	CATG	1 cut(s)	597
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	441, 555, 708, 741, 858
FokI	GGATG	2 cut(s)	782, 845
Fsp4HI	GCNGC	5 cut(s)	441, 555, 708, 741, 858
FspBI	CTAG	2 cut(s)	614, 915
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	5 cut(s)	441, 555, 708, 741, 858
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	127, 157, 924
HapII	CCGG	2 cut(s)	174, 830
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	2 cut(s)	347, 461
HinfI	GANTC	4 cut(s)	393, 507, 675, 773
HpaII	CCGG	2 cut(s)	174, 830
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	423, 537
Hpy188III	TCNNGA	8 cut(s)	266, 278, 413, 449, 527, 563, 830, 866
Hpy99I	CGWCG	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	852
HpyCH4V	TGCA	5 cut(s)	193, 605, 671, 743, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 638
HpyF3I	CTNAG	2 cut(s)	129, 711
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kpn2I	TCCGGA	1 cut(s)	829
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
LmnI	GCTCC	4 cut(s)	30, 424, 538, 841
Lsp1109I	GCAGC	5 cut(s)	427, 541, 694, 727, 844
LweI	GCATC	6 cut(s)	53, 406, 520, 745, 823, 828
MaeI	CTAG	2 cut(s)	614, 915
MaeIII	GTNAC	2 cut(s)	296, 676
MalI	GATC	8 cut(s)	264, 276, 411, 525, 619, 696, 828, 903
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
MflI	RGATCY	4 cut(s)	409, 523, 826, 901
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	4 cut(s)	387, 501, 684, 782
MmeI	TCCRAC	2 cut(s)	446, 560
MroI	TCCGGA	1 cut(s)	829
MseI	TTAA	5 cut(s)	345, 459, 699, 765, 885
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	2 cut(s)	174, 830
MspR9I	CCNGG	6 cut(s)	29, 239, 541, 654, 844, 893
Mva1269I	GAATGC	2 cut(s)	607, 784
MvaI	CCWGG	6 cut(s)	29, 239, 541, 654, 844, 893
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 638
NarI	GGCGCC	1 cut(s)	35
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	3 cut(s)	36, 411, 525
NmuCI	GTSAC	2 cut(s)	296, 676
PctI	GAATGC	2 cut(s)	607, 784
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	5 cut(s)	442, 556, 709, 742, 859
PleI	GAGTC	4 cut(s)	387, 501, 683, 781
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	4 cut(s)	387, 501, 683, 781
Psp6I	CCWGG	6 cut(s)	27, 237, 539, 652, 842, 891
PspGI	CCWGG	6 cut(s)	27, 237, 539, 652, 842, 891
PspN4I	GGNNCC	3 cut(s)	36, 411, 525
PspPI	GGNCC	2 cut(s)	156, 923
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	4 cut(s)	409, 523, 826, 901
PvuII	CAGCTG	1 cut(s)	740
SaqAI	TTAA	5 cut(s)	345, 459, 699, 765, 885
SatI	GCNGC	5 cut(s)	441, 555, 708, 741, 858
Sau3AI	GATC	8 cut(s)	262, 274, 409, 523, 617, 694, 826, 901
Sau96I	GGNCC	2 cut(s)	156, 923
SchI	GAGTC	4 cut(s)	387, 501, 684, 782
ScrFI	CCNGG	6 cut(s)	29, 239, 541, 654, 844, 893
SfaNI	GCATC	6 cut(s)	53, 406, 520, 745, 823, 828
SfcI	CTRYAG	1 cut(s)	741
SfoI	GGCGCC	1 cut(s)	36
SsiI	CCGC	3 cut(s)	142, 148, 499
SspDI	GGCGCC	1 cut(s)	34
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	2 cut(s)	614, 915
StyD4I	CCNGG	6 cut(s)	27, 237, 539, 652, 842, 891
StyI	CCWWGG	4 cut(s)	152, 397, 511, 926
TaaI	ACNGT	1 cut(s)	852
TaqI	TCGA	1 cut(s)	318
Tru1I	TTAA	5 cut(s)	345, 459, 699, 765, 885
Tru9I	TTAA	5 cut(s)	345, 459, 699, 765, 885
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	2 cut(s)	296, 676
TseI	GCWGC	5 cut(s)	440, 554, 707, 740, 857
Tsp45I	GTSAC	2 cut(s)	296, 676
TspDTI	ATGAA	4 cut(s)	189, 261, 614, 623
TspRI	CASTG	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	2 cut(s)	433, 850
XspI	CTAG	2 cut(s)	614, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.