Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16839926 .. 16840549

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCATTCCTCGGAAACCAACCAGACCAAGATGATGATGAAGACGATGACAAAGAAGAAGAAAGTGACCCTACCCCTGACGACCTCGAATACATCGGCCAGATCAAAGGGGTTAAGTTCACCATCGCGATTGAGGACATGAGAGAAGTTGAGCGCAGGAAACTCGTTGGGATCAAATATCCTGATGTTCCCACTAGGGAACAGTTGGCTGCTGTTCTTGAAGAAGTCCCTCCTTTTAAGTTCCTGGATCTAGATCCTCTCCTTGGCTGGTTTTGGTCCTTGGTTTTCTTGACTTTGTATCTAGGCGATTCACCAACCATCCAAAGACCCATAAAGAGATACGTTACAGTGTTGACATTAAATGTCACAGTATTGCCTTTTATTCAAACAAATAATCCATTAATAGATTTCAATGTAAATTCATTTGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.55

Weight (kDa)

4.19

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AclWI	GGATC	3 cut(s)	179, 248, 255
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	221, 386, 412
AjnI	CCWGG	1 cut(s)	243
AlwI	GGATC	3 cut(s)	179, 248, 255
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	418
AseI	ATTAAT	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	112, 303
AvaII	GGWCC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	131, 326
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	245
BfaI	CTAG	3 cut(s)	195, 251, 302
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	10, 262, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	10, 262, 279
BseGI	GGATG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	102, 171, 247, 253
Bsp68I	TCGCGA	1 cut(s)	128
BspANI	GGCC	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	128
BspPI	GGATC	3 cut(s)	179, 248, 255
BssECI	CCNNGG	3 cut(s)	10, 262, 279
BssMI	GATC	4 cut(s)	102, 171, 247, 253
BssT1I	CCWWGG	2 cut(s)	262, 279
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	204, 349, 370
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	105, 174, 250, 256
BstMBI	GATC	4 cut(s)	102, 171, 247, 253
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	247, 253
BstYI	RGATCY	2 cut(s)	247, 253
BsuRI	GGCC	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	354
BtuMI	TCGCGA	1 cut(s)	128
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	276
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	99, 209, 267
CviKI_1	RGCY	3 cut(s)	99, 209, 267
DpnI	GATC	4 cut(s)	104, 173, 249, 255
DpnII	GATC	4 cut(s)	102, 171, 247, 253
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	262, 279
Eco47I	GGWCC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	262, 279
ErhI	CCWWGG	2 cut(s)	262, 279
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 332
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	3 cut(s)	195, 251, 302
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	2 cut(s)	112, 303
Hpy166II	GTNNAC	2 cut(s)	120, 354
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	5 cut(s)	127, 182, 218, 251, 289
Hpy8I	GTNNAC	2 cut(s)	120, 354
HpyCH4III	ACNGT	3 cut(s)	204, 349, 370
HpyCH4IV	ACGT	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	102, 171, 247, 253
LpnPI	CCDG	8 cut(s)	36, 90, 113, 142, 195, 230, 253, 257
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	195, 251, 302
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	65, 343, 364
MalI	GATC	4 cut(s)	104, 173, 249, 255
MboI	GATC	4 cut(s)	102, 171, 247, 253
MboII	GAAGA	4 cut(s)	53, 68, 71, 233
MflI	RGATCY	2 cut(s)	247, 253
MluCI	AATT	1 cut(s)	418
MnlI	CCTC	5 cut(s)	20, 95, 127, 240, 267
MseI	TTAA	4 cut(s)	114, 237, 359, 401
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	128
NdeII	GATC	4 cut(s)	102, 171, 247, 253
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	65, 364
NruI	TCGCGA	1 cut(s)	128
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	247, 253
RruI	TCGCGA	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	114, 237, 359, 401
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	4 cut(s)	102, 171, 247, 253
Sau96I	GGNCC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	2 cut(s)	87, 345
SinI	GGWCC	1 cut(s)	276
Sse9I	AATT	1 cut(s)	418
SspMI	CTAG	3 cut(s)	195, 251, 302
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	262, 279
TaaI	ACNGT	3 cut(s)	204, 349, 370
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	4 cut(s)	114, 237, 359, 401
Tru9I	TTAA	4 cut(s)	114, 237, 359, 401
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	65, 364
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	65, 364
TspDTI	ATGAA	2 cut(s)	54, 411
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	401
XapI	RAATTY	1 cut(s)	418
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	3 cut(s)	195, 251, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.