Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

16028371 .. 16030157

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATGACGACGAGTTCGCAAATGCTCCAGGTGGCGCCACTCGCACCACACGCTTCCTCCTCCTCATCTTCTTCTTCGTCCAAAACCCTCCCAGTCTGGTTCATCCATTGCCATTGCCACCCTTCACGGCCTCAGCTCACTCTCCGCCACCGCCCAAGGTCCCCAATACTACTCGCCGGAAACCCAGATAGGAAGTTGCAAGTTTCTTCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGAAGATGGAGACGATGACCAAGAAGAAGAAGGAAGTGACCCTACTCCTGACGACCTCGAATACATCAGCCAAATCAGAAGGGTGTTGGAGCTTCTTAAGAAGAACAGTGACATGATTTTCAATGAGGTTAAGCTTACTGTTGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCATTGGCATTGAGGATCCTGATGCTCCGACCAGGGAAGATTTGGCTGCTGTTCTTGAAGAAGTGAATGAGGGGAAAATCCCCAAAAATCGACTTGCACTTAAACTGCTAGCTGAGGAAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

4.7

Isoelectric Point (pI)

78.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	3 cut(s)	145, 151, 430
AclWI	GGATC	2 cut(s)	449, 462
AcyI	GRCGYC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	382, 497
AjnI	CCWGG	3 cut(s)	27, 243, 470
AluBI	AGCT	4 cut(s)	136, 352, 394, 551
AluI	AGCT	4 cut(s)	136, 352, 394, 551
Alw26I	GTCTC	2 cut(s)	264, 430
AlwI	GGATC	2 cut(s)	449, 462
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	2 cut(s)	132, 552
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	29, 245, 472
BcoDI	GTCTC	2 cut(s)	264, 430
BfaI	CTAG	1 cut(s)	548
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	3 cut(s)	29, 245, 472
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	36, 161, 456
BmrFI	CCNGG	3 cut(s)	29, 245, 472
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	451
BmtI	GCTAGC	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	2 cut(s)	132, 552
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	155, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	106, 112
BseBI	CCWGG	3 cut(s)	29, 245, 472
BseDI	CCNNGG	2 cut(s)	155, 471
BseGI	GGATG	1 cut(s)	102
BseMI	GCAATG	2 cut(s)	106, 112
BseMII	CTCAG	2 cut(s)	146, 543
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	3 cut(s)	49, 52, 448
BseXI	GCAGC	1 cut(s)	472
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	264, 430
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	3 cut(s)	145, 151, 430
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	145, 544
BspLI	GGNNCC	3 cut(s)	36, 161, 456
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	2 cut(s)	449, 462
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	106, 112
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	155, 471
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	29, 245, 472
Bst4CI	ACNGT	2 cut(s)	368, 400
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	132, 552
BstF5I	GGATG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	2 cut(s)	264, 430
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	3 cut(s)	29, 245, 472
BstSCI	CCNGG	3 cut(s)	27, 243, 470
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	159
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	7 cut(s)	130, 136, 330, 352, 394, 485, 551
CviKI_1	RGCY	7 cut(s)	130, 136, 330, 352, 394, 485, 551
DdeI	CTNAG	2 cut(s)	132, 552
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	3 cut(s)	27, 243, 470
EcoT14I	CCWWGG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	376
FaiI	YATR	2 cut(s)	374, 416
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	338, 468
Hpy188III	TCNNGA	3 cut(s)	308, 458, 494
Hpy99I	CGWCG	2 cut(s)	13, 220
HpyAV	CCTTC	3 cut(s)	132, 284, 333
HpyCH4III	ACNGT	2 cut(s)	368, 400
HpyCH4V	TGCA	2 cut(s)	199, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	2 cut(s)	132, 552
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	3 cut(s)	30, 349, 469
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	296, 368
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	1 cut(s)	454
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	1 cut(s)	562
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	327, 491
MseI	TTAA	3 cut(s)	357, 390, 540
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	29, 245, 472
MvaI	CCWGG	3 cut(s)	29, 245, 472
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	1 cut(s)	454
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	3 cut(s)	36, 161, 456
NmuCI	GTSAC	2 cut(s)	296, 368
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	432
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	27, 243, 470
PspGI	CCWGG	3 cut(s)	27, 243, 470
PspN4I	GGNNCC	3 cut(s)	36, 161, 456
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	357, 390, 540
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	29, 245, 472
SetI	ASST	8 cut(s)	33, 138, 161, 318, 354, 390, 396, 553
SfaNI	GCATC	1 cut(s)	451
SfoI	GGCGCC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	562
SsiI	CCGC	3 cut(s)	145, 151, 430
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	27, 243, 470
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	368, 400
TaqI	TCGA	2 cut(s)	318, 529
TasI	AATT	1 cut(s)	562
Tru1I	TTAA	3 cut(s)	357, 390, 540
Tru9I	TTAA	3 cut(s)	357, 390, 540
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	296, 368
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	2 cut(s)	296, 368
TspDTI	ATGAA	2 cut(s)	91, 267
TspRI	CASTG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.