Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001902.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4715

Gene Structure 4715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001902.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 248 bp

atgaatgttaagctcaccattgggattggggacacaagagaagttgagcgcaaggaactcctaggcattgaagaccttgatgctcccaccagggaagagttggttgttgttcttgaagaaaacatgagttgtgatacatgggaccgctcaagtgagcaattggtgtttgagtctgaaattggattgaagaggcgccacagggaacaaagtgaggaggagaagaaggagaagaaggaggaagagcgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.79

Weight (kDa)

4.68

Isoelectric Point (pI)

91.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	71, 116, 187
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AspA2I	CCTAGG	1 cut(s)	61
AspLEI	GCGC	2 cut(s)	51, 195
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	142
AvrII	CCTAGG	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	91
BfaI	CTAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	196
BlnI	CCTAGG	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	143, 194
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	61, 90
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	61, 90
BseRI	GAGGAG	2 cut(s)	227, 230
BshNI	GGYRCC	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	44, 155
BsmFI	GGGAC	2 cut(s)	44, 155
BspACI	CCGC	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	143, 194
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	61, 90
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	90, 182, 234
BstACI	GRCGYC	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	51, 195
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	51, 195
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	2 cut(s)	124, 138
CviJI	RGCY	1 cut(s)	13
CviKI_1	RGCY	1 cut(s)	13
DinI	GGCGCC	1 cut(s)	194
Eam1104I	CTCTTC	3 cut(s)	90, 182, 234
EarI	CTCTTC	3 cut(s)	90, 182, 234
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	61
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	127, 141
FaiI	YATR	2 cut(s)	125, 139
FaqI	GGGAC	2 cut(s)	44, 155
FatI	CATG	2 cut(s)	123, 137
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	50, 194
HaeII	RGCGCY	1 cut(s)	196
HhaI	GCGC	2 cut(s)	51, 195
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	127, 141
Hin6I	GCGC	2 cut(s)	49, 193
HinP1I	GCGC	2 cut(s)	49, 193
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	217, 226
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	127, 141
HspAI	GCGC	2 cut(s)	49, 193
KasI	GGCGCC	1 cut(s)	192
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	76, 103, 184
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	83, 107, 128, 199, 232, 241
MfeI	CAATTG	1 cut(s)	158
MluCI	AATT	2 cut(s)	158, 177
Mly113I	GGCGCC	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	183, 205, 208, 229
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	91
NarI	GGCGCC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	127, 141
NlaIV	GGNNCC	2 cut(s)	143, 194
PciSI	GCTCTTC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	143, 194
PspPI	GGNCC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	2 cut(s)	15, 78
SfaNI	GCATC	1 cut(s)	70
SfoI	GGCGCC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	158, 177
SsiI	CCGC	1 cut(s)	145
SspDI	GGCGCC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	61
TasI	AATT	2 cut(s)	158, 177
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.