Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Reverse (-)

105650 .. 109297

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001784.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgatgatgacgagttcgcacatgctccaggtggcgccactcgcaccacacgcttcctcatcatcatcttcttcttcttcttcgtcccaaaccctcccggtctggttcaaccattgccattgccacccttcacggtctcagctcactctccgccaccgcccaaggcccacaatactactcgccggaaacccagataggaagttgcaagtttcatcgtcttcgtcgtcatcttggagtacccaacaagaccaggacgacgaagaagaagaagatgaagacgatgaccaacaagaagaagaagaaagtgaccctactcctgacgacctcgaatacatcagccaaatcaaaagggtgctggagcttcttaaaaagaacagagacatgattttcaatgaggttaagcttactattgcgattgaggacataagagaagttgagcggaggagactccttggcatcgaggatcctgatgctcccaccagggaagagttggctgctgttcttgaagaagtaagtccaaccttacagattcctatgtttagtgctcgttacactggtattgatcttaaagaggctgctaagagactgaacattgattggaatacaggtgcagagattgacgatgctgatgttaaggatgagtcagatgtgccttcagctgtggttaagttcaccatcgcgattgtggacatgagagaagttgagagcaggaaacacattggcatcaaagatcctgatgctcccaccagggaggctggtattcttgaagacgtccctccttttaagttcccagatcctctcccaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.23

Weight (kDa)

4.56

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	439
AccII	CGCG	1 cut(s)	680
AciI	CCGC	3 cut(s)	151, 157, 439
AclWI	GGATC	4 cut(s)	458, 471, 725, 788
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	35, 771
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	4 cut(s)	109, 391, 506, 767
AjnI	CCWGG	5 cut(s)	27, 249, 479, 746, 802
AluBI	AGCT	4 cut(s)	142, 361, 403, 659
AluI	AGCT	4 cut(s)	142, 361, 403, 659
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	4 cut(s)	141, 372, 439, 577
AlwI	GGATC	4 cut(s)	458, 471, 725, 788
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	494, 575
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	3 cut(s)	210, 282, 774
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	481, 562
BccI	CCATC	1 cut(s)	683
BciT130I	CCWGG	5 cut(s)	29, 251, 481, 748, 804
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	4 cut(s)	141, 372, 439, 577
BfaI	CTAG	1 cut(s)	808
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	2 cut(s)	495, 576
BlsI	GCNGC	2 cut(s)	496, 577
Bme1390I	CCNGG	6 cut(s)	29, 98, 251, 481, 748, 804
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	36, 465
BmrFI	CCNGG	6 cut(s)	29, 98, 251, 481, 748, 804
BmsI	GCATC	5 cut(s)	460, 465, 613, 727, 732
BpiI	GAAGAC	3 cut(s)	210, 282, 774
BpmI	CTGGAG	2 cut(s)	11, 377
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	2 cut(s)	35, 771
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	161, 451, 480, 747, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	2 cut(s)	112, 118
BseBI	CCWGG	5 cut(s)	29, 251, 481, 748, 804
BseDI	CCNNGG	5 cut(s)	161, 451, 480, 747, 802
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMI	GCAATG	2 cut(s)	112, 118
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	481, 562
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	98, 183
BslFI	GGGAC	2 cut(s)	70, 758
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	4 cut(s)	141, 372, 439, 577
BsmFI	GGGAC	2 cut(s)	70, 758
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	463, 562, 730, 793
Bsp68I	TCGCGA	1 cut(s)	680
BspACI	CCGC	3 cut(s)	151, 157, 439
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	2 cut(s)	36, 465
BspPI	GGATC	4 cut(s)	458, 471, 725, 788
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	112, 118
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	5 cut(s)	161, 451, 480, 747, 802
BssMI	GATC	4 cut(s)	463, 562, 730, 793
BssNI	GRCGYC	2 cut(s)	35, 771
BssT1I	CCWWGG	2 cut(s)	161, 451
Bst2UI	CCWGG	5 cut(s)	29, 251, 481, 748, 804
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	2 cut(s)	35, 771
BstDEI	CTNAG	2 cut(s)	138, 579
BstENI	CCTNNNNNAGG	1 cut(s)	801
BstF5I	GGATG	1 cut(s)	643
BstFNI	CGCG	1 cut(s)	680
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	466, 565, 733, 796
BstMAI	GTCTC	4 cut(s)	141, 372, 439, 577
BstMBI	GATC	4 cut(s)	463, 562, 730, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	5 cut(s)	29, 251, 481, 748, 804
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	6 cut(s)	27, 96, 249, 479, 746, 802
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	2 cut(s)	481, 562
BstV2I	GAAGAC	3 cut(s)	210, 282, 774
BstX2I	RGATCY	3 cut(s)	463, 730, 793
BstYI	RGATCY	3 cut(s)	463, 730, 793
BsuRI	GGCC	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	552
BtuMI	TCGCGA	1 cut(s)	680
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	3 cut(s)	22, 382, 691
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	2 cut(s)	138, 579
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	4 cut(s)	465, 564, 732, 795
DpnII	GATC	4 cut(s)	463, 562, 730, 793
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	161, 451
Eco31I	GGTCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	639
EcoNI	CCTNNNNNAGG	1 cut(s)	801
EcoRII	CCWGG	5 cut(s)	27, 249, 479, 746, 802
EcoT14I	CCWWGG	2 cut(s)	161, 451
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	161, 451
FaeI	CATG	3 cut(s)	25, 385, 694
FaiI	YATR	5 cut(s)	23, 383, 425, 536, 692
FaqI	GGGAC	2 cut(s)	70, 758
FatI	CATG	3 cut(s)	21, 381, 690
Fnu4HI	GCNGC	2 cut(s)	495, 576
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	495, 576
FspBI	CTAG	1 cut(s)	808
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	2 cut(s)	495, 576
GsuI	CTGGAG	2 cut(s)	11, 377
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	2 cut(s)	98, 183
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	2 cut(s)	35, 771
Hin1II	CATG	3 cut(s)	25, 385, 694
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	447, 529, 641
HpaII	CCGG	2 cut(s)	98, 183
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	672, 688
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	6 cut(s)	317, 467, 503, 679, 734, 764
Hpy8I	GTNNAC	2 cut(s)	672, 688
Hpy99I	CGWCG	2 cut(s)	226, 260
HpyAV	CCTTC	2 cut(s)	138, 663
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	2 cut(s)	205, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	2 cut(s)	138, 579
HpySE526I	ACGT	1 cut(s)	771
Hsp92I	GRCGYC	2 cut(s)	35, 771
Hsp92II	CATG	3 cut(s)	25, 385, 694
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	463, 562, 730, 793
LmnI	GCTCC	4 cut(s)	30, 358, 478, 745
Lsp1109I	GCAGC	2 cut(s)	481, 562
LweI	GCATC	5 cut(s)	460, 465, 613, 727, 732
MaeI	CTAG	1 cut(s)	808
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	305, 548
MalI	GATC	4 cut(s)	465, 564, 732, 795
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	4 cut(s)	463, 562, 730, 793
MflI	RGATCY	3 cut(s)	463, 730, 793
MhlI	GDGCHC	1 cut(s)	547
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	441, 650
MmeI	TCCRAC	1 cut(s)	542
MseI	TTAA	6 cut(s)	366, 399, 567, 633, 666, 783
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	2 cut(s)	98, 183
MspR9I	CCNGG	6 cut(s)	29, 98, 251, 481, 748, 804
MvaI	CCWGG	5 cut(s)	29, 251, 481, 748, 804
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	463, 562, 730, 793
NlaIII	CATG	3 cut(s)	25, 385, 694
NlaIV	GGNNCC	2 cut(s)	36, 465
NmuCI	GTSAC	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	680
NspI	RCATGY	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	496, 577
PleI	GAGTC	2 cut(s)	441, 649
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	2 cut(s)	441, 649
Psp6I	CCWGG	5 cut(s)	27, 249, 479, 746, 802
PspGI	CCWGG	5 cut(s)	27, 249, 479, 746, 802
PspN4I	GGNNCC	2 cut(s)	36, 465
PspPI	GGNCC	1 cut(s)	165
PsuI	RGATCY	3 cut(s)	463, 730, 793
PvuII	CAGCTG	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	680
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	6 cut(s)	366, 399, 567, 633, 666, 783
SatI	GCNGC	2 cut(s)	495, 576
Sau3AI	GATC	4 cut(s)	463, 562, 730, 793
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	2 cut(s)	441, 650
ScrFI	CCNGG	6 cut(s)	29, 98, 251, 481, 748, 804
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	5 cut(s)	460, 465, 613, 727, 732
SfoI	GGCGCC	1 cut(s)	36
SsiI	CCGC	3 cut(s)	151, 157, 439
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	808
StyD4I	CCNGG	6 cut(s)	27, 96, 249, 479, 746, 802
StyI	CCWWGG	2 cut(s)	161, 451
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	2 cut(s)	327, 459
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	6 cut(s)	366, 399, 567, 633, 666, 783
Tru9I	TTAA	6 cut(s)	366, 399, 567, 633, 666, 783
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	494, 575
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	201, 288
TspRI	CASTG	1 cut(s)	559
XagI	CCTNNNNNAGG	1 cut(s)	801
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	2 cut(s)	487, 682
XspI	CTAG	1 cut(s)	808
ZraI	GACGTC	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.