Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

24474888 .. 24477545

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21910.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAGGTGGTGATGGGTTTGCAAATTCTCCAAGTGGCGCCACTGCCACCACTCACTGCTTCCTCCACCACCTCCTCCTCCTCATCTTCTTCTTCTTCTTGTCGGGTCCAAACCCTCCCACTCTGGCTCAACCAACGCCACTCCCACTGCCGCCACTCACGGCCTCAGCTTGCTCTCCCACCTCGCCACTCGATCAAAAGAACCACACTCTCACTCGTCGGCAGGAAAGGTAGGAAATTGCAAGCTTCTTCATCATCTTCTTCAACTACCCAACAAGACCAGGATGACGAAGAAGAATACGAAGACGACGAAGAAGATGAAGAAGATGAATCGGACCCTGACCCGGAAGACCTCGAATACGTGGGCCAAATCAAAAGGGTGTTGGAGCTTCTCCGAAAGAACAGAGACATGCTTTTCAGTGAGGTTAAGCTCACTGTAATGATTGAGGACCTGCGAGAAGTTGAGCGCAGGAGACTCCTCGGCATCGAAGATCCTGATGCCCCTACTAGGGAGGAATTGGCTGATGTTCTTGAAGAAGTGAATGAAGGAAAAATCCCAAAGAATCGACTTGCTCTTAAACTGCTGGCAGCGGAAATGAATCAATGGCCTAATCTAGAGGTTCAGATTACACCAGCGAAGAAAAAGCCTGGTAAGTCCCTGTATGCAAGAGTGACCGACACTGGAATTGATCTTCAAGAGGCTGCTAAGAGACTGAAGATTGATTGGGATACAGCTGCTGAGATTGATGATGGTGATCTTAAAGATGAAAATGAAGTGCCGTCAGTTTTGGGCTATGGAGCACTGTACTTAGTCACGGCTTTCCCCGTCATTATTGGTGTATCAGTGGTATTAATTTTGTTTTACAATTCACTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.79

Weight (kDa)

4.84

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	151, 590
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	3 cut(s)	343, 507, 508
AgsI	TTSAA	3 cut(s)	264, 533, 695
AjnI	CCWGG	2 cut(s)	279, 646
AluBI	AGCT	5 cut(s)	169, 245, 388, 430, 734
AluI	AGCT	5 cut(s)	169, 245, 388, 430, 734
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	3 cut(s)	399, 466, 703
AlwI	GGATC	1 cut(s)	485
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	3 cut(s)	161, 364, 605
ApeKI	GCWGC	3 cut(s)	587, 701, 734
ApoI	RAATTY	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	40, 468
AspS9I	GGNCC	4 cut(s)	106, 334, 364, 448
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	22, 764
AvaII	GGWCC	3 cut(s)	106, 334, 448
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	309, 354
Bbv12I	GWGCWC	1 cut(s)	802
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	599, 688, 721
BccI	CCATC	2 cut(s)	7, 743
BceAI	ACGGC	3 cut(s)	176, 763, 831
BciT130I	CCWGG	2 cut(s)	281, 648
BciVI	GTATCC	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	399, 466, 703
BfaI	CTAG	2 cut(s)	507, 614
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	4 cut(s)	151, 588, 702, 735
BlsI	GCNGC	4 cut(s)	152, 589, 703, 736
Bme1390I	CCNGG	3 cut(s)	281, 344, 648
Bme18I	GGWCC	3 cut(s)	106, 334, 448
BmgT120I	GGNCC	4 cut(s)	106, 334, 364, 448
BmiI	GGNNCC	3 cut(s)	39, 107, 336
BmrFI	CCNGG	3 cut(s)	281, 344, 648
BmsI	GCATC	2 cut(s)	487, 492
BpiI	GAAGAC	2 cut(s)	309, 354
BpmI	CTGGAG	1 cut(s)	857
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	753
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 507, 508
Bse1I	ACTGG	2 cut(s)	685, 874
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	281, 648
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	343, 507, 508
BseMII	CTCAG	2 cut(s)	179, 729
BseNI	ACTGG	2 cut(s)	685, 874
BseRI	GAGGAG	4 cut(s)	64, 67, 70, 467
BseXI	GCAGC	3 cut(s)	599, 688, 721
BshFI	GGCC	3 cut(s)	163, 366, 607
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	3 cut(s)	343, 507, 508
BsmAI	GTCTC	3 cut(s)	399, 466, 703
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	163, 366, 607
Bsp1286I	GDGCHC	1 cut(s)	802
Bsp143I	GATC	4 cut(s)	192, 490, 688, 754
BspACI	CCGC	2 cut(s)	151, 590
BspANI	GGCC	3 cut(s)	163, 366, 607
BspCNI	CTCAG	2 cut(s)	178, 730
BspLI	GGNNCC	3 cut(s)	39, 107, 336
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	685, 874
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	192, 490, 688, 754
BssNI	GRCGYC	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	281, 648
Bst4CI	ACNGT	2 cut(s)	436, 804
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	171, 243, 585
BstDEI	CTNAG	4 cut(s)	165, 705, 738, 808
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 468
BstKTI	GATC	4 cut(s)	195, 493, 691, 757
BstMAI	GTCTC	3 cut(s)	399, 466, 703
BstMBI	GATC	4 cut(s)	192, 490, 688, 754
BstNI	CCWGG	2 cut(s)	281, 648
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	279, 342, 646
BstV1I	GCAGC	3 cut(s)	599, 688, 721
BstV2I	GAAGAC	2 cut(s)	309, 354
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	163, 366, 607
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	3 cut(s)	41, 54, 145
BtsIMutI	CAGTG	8 cut(s)	41, 54, 145, 424, 432, 678, 800, 849
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	3 cut(s)	171, 243, 585
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	2 cut(s)	40, 468
Cfr13I	GGNCC	4 cut(s)	106, 334, 364, 448
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	4 cut(s)	165, 705, 738, 808
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	4 cut(s)	194, 492, 690, 756
DpnII	GATC	4 cut(s)	192, 490, 688, 754
Eco47I	GGWCC	3 cut(s)	106, 334, 448
Eco57I	CTGAAG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	279, 646
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	1 cut(s)	412
FaiI	YATR	3 cut(s)	410, 663, 795
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	151, 588, 702, 735
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	4 cut(s)	151, 588, 702, 735
FspBI	CTAG	2 cut(s)	507, 614
GlaI	GCGC	2 cut(s)	39, 467
GluI	GCNGC	4 cut(s)	151, 588, 702, 735
GsuI	CTGGAG	1 cut(s)	857
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	163, 366, 607
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	2 cut(s)	40, 468
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	2 cut(s)	38, 466
HinP1I	GCGC	2 cut(s)	38, 466
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	4 cut(s)	329, 474, 562, 598
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	22, 764
Hpy188I	TCNGA	3 cut(s)	334, 395, 624
Hpy188III	TCNNGA	4 cut(s)	494, 530, 614, 695
Hpy99I	CGWCG	2 cut(s)	221, 311
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	436, 804
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	22, 241, 665
HpyF3I	CTNAG	4 cut(s)	165, 705, 738, 808
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	2 cut(s)	38, 466
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	192, 490, 688, 754
LmnI	GCTCC	2 cut(s)	385, 797
Lsp1109I	GCAGC	3 cut(s)	599, 688, 721
LweI	GCATC	2 cut(s)	487, 492
MaeI	CTAG	2 cut(s)	507, 614
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	670, 811
MalI	GATC	4 cut(s)	194, 492, 690, 756
MboI	GATC	4 cut(s)	192, 490, 688, 754
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	802
MluCI	AATT	6 cut(s)	24, 236, 515, 684, 852, 865
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	363
MseI	TTAA	4 cut(s)	426, 576, 759, 851
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	590, 734
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	281, 344, 648
MvaI	CCWGG	2 cut(s)	281, 648
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	192, 490, 688, 754
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	3 cut(s)	39, 107, 336
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	2 cut(s)	670, 811
NspI	RCATGY	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	329, 562, 598
PkrI	GCNGC	4 cut(s)	152, 589, 703, 736
PleI	GAGTC	1 cut(s)	468
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	279, 646
PspGI	CCWGG	2 cut(s)	279, 646
PspN4I	GGNNCC	3 cut(s)	39, 107, 336
PspPI	GGNCC	4 cut(s)	106, 334, 364, 448
PspPPI	RGGWCCY	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	4 cut(s)	426, 576, 759, 851
SatI	GCNGC	4 cut(s)	151, 588, 702, 735
Sau3AI	GATC	4 cut(s)	192, 490, 688, 754
Sau96I	GGNCC	4 cut(s)	106, 334, 364, 448
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	3 cut(s)	281, 344, 648
SduI	GDGCHC	1 cut(s)	802
SfaNI	GCATC	2 cut(s)	487, 492
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	3 cut(s)	106, 334, 448
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	6 cut(s)	24, 236, 515, 684, 852, 865
SsiI	CCGC	2 cut(s)	151, 590
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	507, 614
StyD4I	CCNGG	3 cut(s)	279, 342, 646
TaaI	ACNGT	2 cut(s)	436, 804
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	191, 354, 486, 565
TaqII	GACCGA	1 cut(s)	689
TasI	AATT	6 cut(s)	24, 236, 515, 684, 852, 865
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	329, 562, 598
Tru1I	TTAA	4 cut(s)	426, 576, 759, 851
Tru9I	TTAA	4 cut(s)	426, 576, 759, 851
TscAI	CASTG	8 cut(s)	48, 61, 152, 424, 439, 685, 807, 849
TseFI	GTSAC	2 cut(s)	670, 811
TseI	GCWGC	3 cut(s)	587, 701, 734
Tsp45I	GTSAC	2 cut(s)	670, 811
TspDTI	ATGAA	8 cut(s)	17, 240, 333, 342, 558, 611, 780, 786
TspRI	CASTG	8 cut(s)	48, 61, 152, 424, 439, 685, 807, 849
VpaK11BI	GGWCC	3 cut(s)	106, 334, 448
VspI	ATTAAT	1 cut(s)	851
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	2 cut(s)	507, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.