Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003520

Physical Location & Seq

Genomic Coordinates Forward (+)

22092581 .. 22094671

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAGGATTTCAACTGCCATTTAGTTTTGAAAGTGGCGATGGGTTTGCAAGTTCTCCAAGTGGCTCCACCGCCACCACTCACTTCCTCCTCCTCATCTTCTTGTCGGGTCCAGACCCTACCACTCTGGCTCAACCAACGCAACTGCCACTGCCGCCGCTCGCGGCCTCAGCTTGCTCTTCCGCCCCGCCACTCGTACAAAAGAACCGCACTCTCGCTCCTCGGTAGGAAAGATAGGAAATTGCAAGCTTCTTCATCATCTTCTTCAACTACCCAACAAGACCAGGATGATGAAGAAGAATATGAAGACGACGAAGGAGATGAAGAAGATGAATCGGACCCTGACCCGGAAGACCTCGAATACGTTGCCCAAATCAAAAGGGTGTTGGAGCTTCTCCGGAAGAACAGAGACATGATTTTCAGCGAGGTTAAGCTCACTGTTATGATTGAGGACCTGCGAGAAGTTGAGCGCAGGAGGCTCCTCGGAATTGAAGATCCTGATGCCCCTACTAGGGAGGAATTGGCCGATGTTCTTGAGGAAGTGAATGAAGGAAAAATCCCAAAAAATCGACTTGCTCTTAAACTGCTGGCAGCGGAAATGAATCAATGGCCTAATCTAGAGGTTCAGATTACACCAGCGAAGAAAAAGCCTGGTAAGTCCCTATATGCAAGAGTGACAGACACTGGTATTGATCTTCAAGAGGCTGCAAAGAGACTGAAGATTGATTGGGATACGGCTGCTGAGATTGATGATGGTCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.93

Weight (kDa)

4.97

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44650
fragaria_vesca	FvH4_3g13341 FvH4_3g13341
malus_domestica	MD05G1242600.v1.1 MD10G1224400.v1.1
prunus_persica	Prupe.4G120800_v2.0.a1 Prupe.4G120800_v2.0.a1
pyrus_communis	pycom05g21910 pycom10g18840
rosa_chinensis	RchiOBHm_Chr4g0398911 RchiOBHm_Chr5g0021881 RchiOBHm_Chr5g0021891 RchiOBHm_Chr5g0021951 RchiOBHm_Chr5g0021961
rosa_laevigata	RLG00000032634 RLG00000032637
rosa_multiflora	Rmu_sc0001585.1_g000007 Rmu_sc0001784.1_g000016 Rmu_sc0001784.1_g000023 Rmu_sc0001784.1_g000029 Rmu_sc0001902.1_g000001 Rmu_sc0007239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110770
rosa_rugosa	Rorug05G0069700 Rorug05G0070700
rosa_samantha	Rh5AG158400 Rh5AG158500 Rh5AG158600 Rh5BG157900 Rh5CG172200 Rh5CG172300 Rh7AG276300 Rh7CG127700 Rh7CG295400
rosa_wichuraiana	Rw5G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	396
AciI	CCGC	8 cut(s)	71, 154, 157, 163, 182, 187, 207, 593
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	346, 510, 511
AgsI	TTSAA	5 cut(s)	13, 31, 267, 491, 698
AjnI	CCWGG	2 cut(s)	282, 649
AluBI	AGCT	4 cut(s)	172, 248, 391, 433
AluI	AGCT	4 cut(s)	172, 248, 391, 433
Alw26I	GTCTC	2 cut(s)	402, 706
AlwI	GGATC	1 cut(s)	488
AlwNI	CAGNNNCTG	1 cut(s)	683
Aor13HI	TCCGGA	1 cut(s)	396
AoxI	GGCC	3 cut(s)	164, 522, 608
ApeKI	GCWGC	3 cut(s)	590, 704, 737
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	3 cut(s)	109, 337, 451
AsuC2I	CCSGG	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	109, 337, 451
BbsI	GAAGAC	2 cut(s)	312, 357
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	602, 691, 724
BccI	CCATC	2 cut(s)	34, 746
BceAI	ACGGC	1 cut(s)	750
BcgI	CGANNNNNNTGC	4 cut(s)	28, 62, 347, 381
BciT130I	CCWGG	2 cut(s)	284, 651
BciVI	GTATCC	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	402, 706
BfaI	CTAG	2 cut(s)	510, 617
BfuAI	ACCTGC	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	6 cut(s)	154, 157, 164, 591, 705, 738
BlsI	GCNGC	6 cut(s)	155, 158, 165, 592, 706, 739
Bme1390I	CCNGG	3 cut(s)	284, 347, 651
Bme18I	GGWCC	3 cut(s)	109, 337, 451
BmgT120I	GGNCC	3 cut(s)	109, 337, 451
BmiI	GGNNCC	4 cut(s)	66, 110, 339, 479
BmrFI	CCNGG	3 cut(s)	284, 347, 651
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	312, 357
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	220, 481
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 510, 511
Bse1I	ACTGG	1 cut(s)	688
BseAI	TCCGGA	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	284, 651
BseDI	CCNNGG	2 cut(s)	220, 481
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	3 cut(s)	346, 510, 511
BseMII	CTCAG	2 cut(s)	182, 732
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	4 cut(s)	79, 82, 209, 470
BseXI	GCAGC	3 cut(s)	602, 691, 724
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	166, 524, 610
BsiSI	CCGG	2 cut(s)	347, 397
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	346, 510, 511
BsmAI	GTCTC	2 cut(s)	402, 706
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	166, 524, 610
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	493, 691, 758
BspACI	CCGC	8 cut(s)	71, 154, 157, 163, 182, 187, 207, 593
BspANI	GGCC	3 cut(s)	166, 524, 610
BspCNI	CTCAG	2 cut(s)	181, 733
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	66, 110, 339, 479
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	220, 481
BssMI	GATC	3 cut(s)	493, 691, 758
Bst2UI	CCWGG	2 cut(s)	284, 651
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	161, 174, 246, 588
BstDEI	CTNAG	2 cut(s)	168, 741
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	496, 694, 761
BstMAI	GTCTC	2 cut(s)	402, 706
BstMBI	GATC	3 cut(s)	493, 691, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 169, 475
BstNI	CCWGG	2 cut(s)	284, 651
BstSCI	CCNGG	3 cut(s)	282, 345, 649
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	602, 691, 724
BstV2I	GAAGAC	2 cut(s)	312, 357
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	166, 524, 610
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	148, 435, 681
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	161, 174, 246, 588
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	3 cut(s)	109, 337, 451
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	168, 741
DpnI	GATC	3 cut(s)	495, 693, 760
DpnII	GATC	3 cut(s)	493, 691, 758
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	109, 337, 451
Eco57I	CTGAAG	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	282, 649
FaeI	CATG	1 cut(s)	415
FaiI	YATR	5 cut(s)	303, 413, 443, 664, 666
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	154, 157, 164, 591, 705, 738
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	154, 157, 164, 591, 705, 738
FspBI	CTAG	2 cut(s)	510, 617
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	6 cut(s)	154, 157, 164, 591, 705, 738
HaeIII	GGCC	3 cut(s)	166, 524, 610
HapII	CCGG	2 cut(s)	347, 397
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	332, 601
HpaII	CCGG	2 cut(s)	347, 397
Hpy188I	TCNGA	3 cut(s)	337, 485, 627
Hpy188III	TCNNGA	6 cut(s)	112, 397, 497, 533, 617, 698
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	308, 542
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	5 cut(s)	4, 49, 244, 668, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 169, 475
HpyF3I	CTNAG	2 cut(s)	168, 741
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	469
Kpn2I	TCCGGA	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	493, 691, 758
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	4 cut(s)	70, 222, 388, 483
Lsp1109I	GCAGC	3 cut(s)	602, 691, 724
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	510, 617
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	3 cut(s)	495, 693, 760
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	493, 691, 758
MflI	RGATCY	1 cut(s)	493
MluCI	AATT	3 cut(s)	239, 486, 518
MmeI	TCCRAC	1 cut(s)	366
MroI	TCCGGA	1 cut(s)	396
MseI	TTAA	3 cut(s)	429, 579, 763
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	347, 397
MspR9I	CCNGG	3 cut(s)	284, 347, 651
MvaI	CCWGG	2 cut(s)	284, 651
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	153, 169, 475
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	493, 691, 758
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	4 cut(s)	66, 110, 339, 479
NmuCI	GTSAC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	332, 601
PkrI	GCNGC	6 cut(s)	155, 158, 165, 592, 706, 739
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	282, 649
PspGI	CCWGG	2 cut(s)	282, 649
PspN4I	GGNNCC	4 cut(s)	66, 110, 339, 479
PspPI	GGNCC	3 cut(s)	109, 337, 451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	429, 579, 763
SatI	GCNGC	6 cut(s)	154, 157, 164, 591, 705, 738
Sau3AI	GATC	3 cut(s)	493, 691, 758
Sau96I	GGNCC	3 cut(s)	109, 337, 451
ScrFI	CCNGG	3 cut(s)	284, 347, 651
SetI	ASST	9 cut(s)	174, 250, 357, 366, 393, 429, 435, 456, 624
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	3 cut(s)	109, 337, 451
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	3 cut(s)	239, 486, 518
SsiI	CCGC	8 cut(s)	71, 154, 157, 163, 182, 187, 207, 593
SspMI	CTAG	2 cut(s)	510, 617
StyD4I	CCNGG	3 cut(s)	282, 345, 649
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	357, 568, 757
TasI	AATT	3 cut(s)	239, 486, 518
TauI	GCSGC	3 cut(s)	156, 159, 166
TfiI	GAWTC	2 cut(s)	332, 601
Tru1I	TTAA	3 cut(s)	429, 579, 763
Tru9I	TTAA	3 cut(s)	429, 579, 763
TscAI	CASTG	3 cut(s)	155, 442, 688
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	3 cut(s)	590, 704, 737
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	7 cut(s)	243, 306, 318, 336, 345, 561, 614
TspRI	CASTG	3 cut(s)	155, 442, 688
VpaK11BI	GGWCC	3 cut(s)	109, 337, 451
XbaI	TCTAGA	1 cut(s)	616
XspI	CTAG	2 cut(s)	510, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.