Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Reverse (-)

23435291 .. 23437347

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAGGTTTGTCGCTGGAGTTTACAGTTAACACTTGGAATCTCAGGTCTCTCTCTCAAGTTCCATGTCCTTTAAGACATGGCTTTCGATTCCCGCGTCGGTTGACACGAAGAAGAACGATTCTCATGTGTTCTGATTCAAGCTCTCAGTCGTGGAATGTTCCTGTTTTATCTAGCTATGAGGTTGGTGAGAGGCTAAAACTAGCAAGAGGAGGACAACAGTTCTTGGCCATGTACTCAAGTGTTGTTGATGGAATTACAACCGATCCAGCAGCGATGGTTCTTCCATTGGATGATCACATGGTTCACCGTGGTCATGGAGTCTTTGACACTGCCCTGATCATCAATGGATACCTTTATGAATTGGATCAGCACCTTGACCGTATCTTGCGATCTGCATCAATGGCTAAGATCCCACTTCCATTCGATCGAGAAACTATTAAAAGAATTCTCATTCAAACCGTGAGCGTTTCTGGATGTAGAGATGGATCTCTAAGATACTGGCTCTCTGCAGGGCCAGGGGATTTCCTCCTATCTCCATCTCAATGTCTCAAACCAACTCTCTATGCCATTGTTATAAAAACGAACTTCGCCATTAACCCAATAGGTGTCAAGGTAGTGACCTCGTCCATCCCCATAAAGCCTCCAGAGTTTGCCACGGTGAAAAGTGTTAACTACCTCCCTAACGTACTCTCACAAATGGAAGCTGAGGCCAAAGGAGCTTATGCAGGTATTTGGGTGTGTAAAGATGGGTTTATTGCAGAAGGCCCGAACATGAATGTGGCGTTTGTTGTTAATGGTGGTAAGGAGCTTGTGATGCCGCGGTTTGATAACGTTTTGAGCGGATGTACAGCAAAGAGAACACTTACACTCGCTGAACAGCTTGTAAGCAAGGGGATTCTTAAAACTGTGAAAGTAATGGATGTGACAGTCGAAGATGGAAAGAAAGCAGATGAGATGATGCTTATTGGTAGTGGAATTCCGATCAGACCTGTGATTCAATGGGATGAAGAATTTATTGGTGAAGGAAAAGAAGGTCCTATAGCAAAGGCGCTTCTTGATCTGTTACTTGAAGATATGAGATCTGGTCCACCTTCCGTTCGTGTTCTTGTTCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

373

Amino Acids

41.06

Weight (kDa)

8.65

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	30 - 258	3.4e-45	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	843
AccII	CGCG	2 cut(s)	97, 823
AciI	CCGC	4 cut(s)	95, 821, 823, 843
AclI	AACGTT	1 cut(s)	834
AclWI	GGATC	4 cut(s)	260, 375, 406, 496
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	447, 978, 1013
AfaI	GTAC	3 cut(s)	236, 690, 850
AgsI	TTSAA	4 cut(s)	141, 458, 1001, 1073
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	1002, 1034
AluBI	AGCT	6 cut(s)	144, 177, 707, 722, 811, 883
AluI	AGCT	6 cut(s)	144, 177, 707, 722, 811, 883
Alw26I	GTCTC	2 cut(s)	54, 554
AlwI	GGATC	4 cut(s)	260, 375, 406, 496
AoxI	GGCC	4 cut(s)	228, 515, 711, 766
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	447, 978, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AspLEI	GCGC	1 cut(s)	1054
AspS9I	GGNCC	4 cut(s)	515, 767, 1037, 1088
AsuHPI	GGTGA	4 cut(s)	200, 299, 673, 1034
AvaII	GGWCC	2 cut(s)	1037, 1088
BalI	TGGCCA	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	7 cut(s)	245, 271, 479, 547, 638, 743, 932
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	344
BclI	TGATCA	2 cut(s)	295, 339
BcoDI	GTCTC	2 cut(s)	54, 554
BfaI	CTAG	2 cut(s)	174, 203
BfmI	CTRYAG	2 cut(s)	510, 1041
BfoI	RGCGCY	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	719
BfuI	GTATCC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	1082
BisI	GCNGC	2 cut(s)	273, 821
BlsI	GCNGC	2 cut(s)	274, 822
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	1037, 1088
BmgT120I	GGNCC	4 cut(s)	515, 767, 1037, 1088
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	407, 807, 951
BpmI	CTGGAG	2 cut(s)	38, 630
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	42, 223
BsaBI	GATNNNNATC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	310, 518, 657, 821
Bse1I	ACTGG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	4 cut(s)	310, 518, 657, 821
BseGI	GGATG	6 cut(s)	298, 482, 630, 851, 928, 1012
BseJI	GATNNNNATC	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	58, 161, 699
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	97, 823
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	4 cut(s)	230, 517, 713, 768
BsiEI	CGRYCG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	54, 554
BsnI	GGCC	4 cut(s)	230, 517, 713, 768
Bso31I	GGTCTC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	848
BspACI	CCGC	4 cut(s)	95, 821, 823, 843
BspANI	GGCC	4 cut(s)	230, 517, 713, 768
BspCNI	CTCAG	3 cut(s)	57, 160, 700
BspFNI	CGCG	2 cut(s)	97, 823
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	719
BspPI	GGATC	4 cut(s)	260, 375, 406, 496
BspTNI	GGTCTC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	310, 518, 657, 821
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	8 cut(s)	28, 222, 311, 383, 463, 661, 910, 931
BstAUI	TGTACA	1 cut(s)	848
BstDEI	CTNAG	5 cut(s)	44, 147, 408, 494, 708
BstDSI	CCRYGG	3 cut(s)	310, 657, 821
BstF5I	GGATG	6 cut(s)	298, 482, 630, 851, 928, 1012
BstFNI	CGCG	2 cut(s)	97, 823
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	1 cut(s)	1054
BstMAI	GTCTC	2 cut(s)	54, 554
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 719, 817
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	2 cut(s)	510, 1041
BstUI	CGCG	2 cut(s)	97, 823
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	411, 488, 1082
BstYI	RGATCY	3 cut(s)	411, 488, 1082
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	230, 517, 713, 768
BtgI	CCRYGG	3 cut(s)	310, 657, 821
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	6 cut(s)	298, 482, 630, 851, 928, 1012
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	719
CfoI	GCGC	1 cut(s)	1054
Cfr13I	GGNCC	4 cut(s)	515, 767, 1037, 1088
Cfr42I	CCGCGG	1 cut(s)	824
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	235, 689, 849
CviAII	CATG	7 cut(s)	66, 80, 127, 232, 301, 317, 775
CviQI	GTAC	3 cut(s)	235, 689, 849
DdeI	CTNAG	5 cut(s)	44, 147, 408, 494, 708
EaeI	YGGCCR	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	1037, 1088
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoRI	GAATTC	2 cut(s)	447, 978
EcoRII	CCWGG	1 cut(s)	517
FaeI	CATG	7 cut(s)	69, 83, 130, 235, 304, 320, 778
FatI	CATG	7 cut(s)	65, 79, 126, 231, 300, 316, 774
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	2 cut(s)	295, 339
Fnu4HI	GCNGC	2 cut(s)	273, 821
FokI	GGATG	6 cut(s)	305, 489, 617, 858, 935, 1019
Fsp4HI	GCNGC	2 cut(s)	273, 821
FspBI	CTAG	2 cut(s)	174, 203
GlaI	GCGC	1 cut(s)	1053
GluI	GCNGC	2 cut(s)	273, 821
GsuI	CTGGAG	2 cut(s)	38, 630
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	4 cut(s)	230, 517, 713, 768
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	1054
Hin1II	CATG	7 cut(s)	69, 83, 130, 235, 304, 320, 778
Hin6I	GCGC	1 cut(s)	1052
HinP1I	GCGC	1 cut(s)	1052
HincII	GTYRAC	3 cut(s)	31, 105, 673
HindII	GTYRAC	3 cut(s)	31, 105, 673
HinfI	GANTC	7 cut(s)	40, 90, 121, 137, 321, 898, 997
HpaI	GTTAAC	2 cut(s)	31, 673
HphI	GGTGA	4 cut(s)	200, 299, 673, 1034
Hpy166II	GTNNAC	6 cut(s)	24, 31, 105, 307, 673, 1091
Hpy188I	TCNGA	3 cut(s)	136, 984, 989
Hpy188III	TCNNGA	4 cut(s)	431, 474, 647, 1058
Hpy8I	GTNNAC	6 cut(s)	24, 31, 105, 307, 673, 1091
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	4 cut(s)	758, 1019, 1028, 1104
HpyCH4III	ACNGT	8 cut(s)	28, 222, 311, 383, 463, 661, 910, 931
HpyCH4IV	ACGT	2 cut(s)	687, 834
HpyCH4V	TGCA	4 cut(s)	398, 512, 728, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 719, 817
HpyF3I	CTNAG	5 cut(s)	44, 147, 408, 494, 708
HpySE526I	ACGT	2 cut(s)	687, 834
Hsp92II	CATG	7 cut(s)	69, 83, 130, 235, 304, 320, 778
HspAI	GCGC	1 cut(s)	1052
Ksp22I	TGATCA	2 cut(s)	295, 339
KspAI	GTTAAC	2 cut(s)	31, 673
KspI	CCGCGG	1 cut(s)	824
LmnI	GCTCC	2 cut(s)	719, 808
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	3 cut(s)	407, 807, 951
MaeI	CTAG	2 cut(s)	174, 203
MaeII	ACGT	2 cut(s)	687, 834
MaeIII	GTNAC	3 cut(s)	619, 925, 1065
MbiI	CCGCTC	1 cut(s)	843
MboII	GAAGA	6 cut(s)	123, 126, 275, 947, 1022, 1085
MflI	RGATCY	3 cut(s)	411, 488, 1082
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	5 cut(s)	255, 362, 447, 978, 1013
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	175, 186, 203, 206, 539, 634, 654, 689, 703
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	7 cut(s)	30, 74, 441, 597, 672, 795, 903
MslI	CAYNNNNRTG	2 cut(s)	544, 779
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	823
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	2 cut(s)	97, 823
MwoI	GCNNNNNNNGC	3 cut(s)	404, 719, 817
NlaIII	CATG	7 cut(s)	69, 83, 130, 235, 304, 320, 778
NmuCI	GTSAC	2 cut(s)	619, 925
PcsI	WCGNNNNNNNCGW	2 cut(s)	94, 106
PfeI	GAWTC	6 cut(s)	40, 90, 121, 137, 898, 997
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	274, 822
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	1037
PsiI	TTATAA	1 cut(s)	578
Psp1406I	AACGTT	1 cut(s)	834
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspPI	GGNCC	4 cut(s)	515, 767, 1037, 1088
PspPPI	RGGWCCY	1 cut(s)	1037
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	3 cut(s)	411, 488, 1082
PsyI	GACNNNGTC	1 cut(s)	625
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	236, 690, 850
RsaNI	GTAC	3 cut(s)	235, 689, 849
RseI	CAYNNNNRTG	2 cut(s)	544, 779
SacII	CCGCGG	1 cut(s)	824
SaqAI	TTAA	7 cut(s)	30, 74, 441, 597, 672, 795, 903
SatI	GCNGC	2 cut(s)	273, 821
Sau96I	GGNCC	4 cut(s)	515, 767, 1037, 1088
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	407, 807, 951
SfcI	CTRYAG	2 cut(s)	510, 1041
Sfr303I	CCGCGG	1 cut(s)	824
SgrBI	CCGCGG	1 cut(s)	824
SinI	GGWCC	2 cut(s)	1037, 1088
SmiMI	CAYNNNNRTG	2 cut(s)	544, 779
SmlI	CTYRAG	2 cut(s)	57, 238
SmoI	CTYRAG	2 cut(s)	57, 238
Sse9I	AATT	5 cut(s)	255, 362, 447, 978, 1013
SsiI	CCGC	4 cut(s)	95, 821, 823, 843
SspMI	CTAG	2 cut(s)	174, 203
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	8 cut(s)	28, 222, 311, 383, 463, 661, 910, 931
TaiI	ACGT	2 cut(s)	690, 837
TaqI	TCGA	4 cut(s)	88, 426, 430, 933
TasI	AATT	5 cut(s)	255, 362, 447, 978, 1013
TatI	WGTACW	2 cut(s)	234, 848
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	6 cut(s)	40, 90, 121, 137, 898, 997
Tru1I	TTAA	7 cut(s)	30, 74, 441, 597, 672, 795, 903
Tru9I	TTAA	7 cut(s)	30, 74, 441, 597, 672, 795, 903
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	619, 925
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	2 cut(s)	619, 925
TspDTI	ATGAA	3 cut(s)	375, 791, 1023
TspGWI	ACGGA	1 cut(s)	1087
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	1037, 1088
XapI	RAATTY	3 cut(s)	447, 978, 1013
XspI	CTAG	2 cut(s)	174, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.