Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Forward (+)

64074620 .. 64077019

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG456600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTTCCCTCCAATCTTTCTCAAAACCCGTCTCGCAAAACCCACATATTACCAGAAAACCAGTTGATCATTCTCTTAGTTTGAGTCTAATTCCACGAAACCTTGCATTTTTAGGACCTGGGTTACGTTTTATTCACCATGGGTCCGCCAAAGAGATGAAAATCATCAGAAGCTCGAAACGAACCGAAGCTGTGACTGATTACAGCATTCAAGTTTCTGATGTCCCACTGCTGACCTGCTCCGAGGCAATGGAAAGGCTAAAAACAAACCGCGAAAATCAAAAGGGTACACAAGAGTTTCTAGCCATGTATTCTAGCATTTTTGGAGGAATAACTACAGATCCATCTGCTATGGTGATCCCTATTGATGACCACATGGTCCACAGAGGGCATGGGGTTTTCGATACTGCTGCTATAAGGGACGGATATCTGTATGAGCTGGACCAGCACATTGACCGTATTTTGAGGTCAGCATCCATGGCAAAAATTGGCCTACCGTTTGATCGAGAAAGCATTAGAAAAATACTCATACAAACAGTGAGTGCTTCCAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGGCAGGACCTGGTGATTTTCAGTTGTCTCCCTCTGCTTGCAATCAGCCAGCTCTTTATGCTATTGTAGTCCAAGACAAATCACCTTTTAGTTCAAAGGGTGTTAAAGTAGTAACTTCGTCAATCCCTATAAAACCACCCCAATTTGCGGTTATGAAGAGTGTGAATTATCTTCCGAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTACCTTTGCAGCGATTTGGCTGGATGGTGATGGATTTATTGCGGAAGGGCCTAACATGAATGTGGCTTTTGTTACAAAAGATAAGGAACTTCTGATGCCTCAGTTTGACAAAATACTAAGTGGCTGCACGGCTAAGAGAGTTTTGGCCCTTGCAGAAGGCCTGGTGAAGGAGGGTAAGCTTCAGGGAGTGAGAGTCGAAAATGTGACTGTTGAGGAAGGGAAAAAGGCAGATGAGATGATGCTTATCGGCAGTGGAATTCTTGTTCGCCCTATAGTGCAATGGGACGAGCAGATCATTGGTGATGGCAAAGAAGGACCCTTGACTCAGATTCTCCTGAATCTTATCATCAAGGACATGGAATCCGGCCCCCTTACTGTCCGAACACCTATTCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

397

Amino Acids

43.64

Weight (kDa)

8.5

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	132 - 359	6.5e-47	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	794
AccB1I	GGYRCC	1 cut(s)	794
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	147, 271, 731, 836
AclWI	GGATC	3 cut(s)	335, 352, 571
AcsI	RAATTY	1 cut(s)	1050
AcuI	CTGAAG	2 cut(s)	804, 959
AfaI	GTAC	3 cut(s)	289, 575, 796
AfiI	CCNNNNNNNGG	2 cut(s)	730, 961
AgsI	TTSAA	3 cut(s)	212, 678, 771
AjnI	CCWGG	3 cut(s)	118, 592, 954
AloI	GAACNNNNNNTCC	3 cut(s)	1041, 1073, 1168
AluBI	AGCT	5 cut(s)	174, 191, 439, 635, 973
AluI	AGCT	5 cut(s)	174, 191, 439, 635, 973
Alw26I	GTCTC	2 cut(s)	37, 615
AlwI	GGATC	3 cut(s)	335, 352, 571
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	5 cut(s)	490, 842, 939, 952, 1159
ApeKI	GCWGC	3 cut(s)	410, 803, 918
ApoI	RAATTY	1 cut(s)	1050
Asp718I	GGTACC	1 cut(s)	794
AspS9I	GGNCC	9 cut(s)	116, 144, 379, 442, 590, 842, 940, 1109, 1160
AsuHPI	GGTGA	7 cut(s)	128, 367, 608, 657, 833, 970, 1106
AvaII	GGWCC	6 cut(s)	116, 144, 379, 442, 590, 1109
BanI	GGYRCC	1 cut(s)	794
BbvI	GCAGC	3 cut(s)	397, 815, 905
BccI	CCATC	5 cut(s)	352, 769, 812, 818, 1091
BceAI	ACGGC	1 cut(s)	939
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	3 cut(s)	120, 594, 956
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	37, 615
BfaI	CTAG	3 cut(s)	302, 315, 1192
BfmI	CTRYAG	2 cut(s)	336, 1065
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	411, 804, 919
BlsI	GCNGC	3 cut(s)	412, 805, 920
Bme1390I	CCNGG	3 cut(s)	120, 594, 956
Bme18I	GGWCC	6 cut(s)	116, 144, 379, 442, 590, 1109
BmgT120I	GGNCC	9 cut(s)	116, 144, 379, 442, 590, 842, 940, 1109, 1160
BmiI	GGNNCC	4 cut(s)	145, 796, 1111, 1162
BmrFI	CCNGG	3 cut(s)	120, 594, 956
BmsI	GCATC	3 cut(s)	482, 879, 1023
BsaBI	GATNNNNATC	2 cut(s)	161, 1037
BsaJI	CCNNGG	4 cut(s)	119, 139, 243, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	972, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 961
Bse1I	ACTGG	2 cut(s)	62, 581
Bse3DI	GCAATG	2 cut(s)	255, 1079
Bse8I	GATNNNNATC	2 cut(s)	161, 1037
BseBI	CCWGG	3 cut(s)	120, 594, 956
BseDI	CCNNGG	4 cut(s)	119, 139, 243, 477
BseGI	GGATG	2 cut(s)	473, 823
BseJI	GATNNNNATC	2 cut(s)	161, 1037
BseLI	CCNNNNNNNGG	2 cut(s)	730, 961
BseMI	GCAATG	2 cut(s)	255, 1079
BseMII	CTCAG	2 cut(s)	908, 1133
BseNI	ACTGG	2 cut(s)	62, 581
BseXI	GCAGC	3 cut(s)	397, 815, 905
BsgI	GTGCAG	1 cut(s)	904
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	5 cut(s)	492, 844, 941, 954, 1161
BshNI	GGYRCC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	1158
BslFI	GGGAC	3 cut(s)	209, 434, 1091
BslI	CCNNNNNNNGG	2 cut(s)	730, 961
BsmAI	GTCTC	2 cut(s)	37, 615
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	3 cut(s)	209, 434, 1091
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	5 cut(s)	492, 844, 941, 954, 1161
Bsp143I	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
Bsp19I	CCATGG	2 cut(s)	139, 477
BspACI	CCGC	4 cut(s)	147, 271, 731, 836
BspANI	GGCC	5 cut(s)	492, 844, 941, 954, 1161
BspCNI	CTCAG	2 cut(s)	907, 1132
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	145, 796, 1111, 1162
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	3 cut(s)	335, 352, 571
BspT107I	GGYRCC	1 cut(s)	794
BsrDI	GCAATG	2 cut(s)	255, 1079
BsrI	ACTGG	2 cut(s)	62, 581
BssECI	CCNNGG	4 cut(s)	119, 139, 243, 477
BssMI	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
BssT1I	CCWWGG	2 cut(s)	139, 477
Bst2UI	CCWGG	3 cut(s)	120, 594, 956
Bst4CI	ACNGT	5 cut(s)	458, 498, 538, 1003, 1171
Bst6I	CTCTTC	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	622, 633
BstDEI	CTNAG	6 cut(s)	77, 569, 894, 911, 927, 1119
BstDSI	CCRYGG	2 cut(s)	139, 477
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	2 cut(s)	473, 823
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	6 cut(s)	70, 343, 360, 505, 566, 1089
BstMAI	GTCTC	2 cut(s)	37, 615
BstMBI	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 479, 641
BstNI	CCWGG	3 cut(s)	120, 594, 956
BstSCI	CCNGG	3 cut(s)	118, 592, 954
BstSFI	CTRYAG	2 cut(s)	336, 1065
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	397, 815, 905
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	492, 844, 941, 954, 1161
BtgI	CCRYGG	2 cut(s)	139, 477
BtsCI	GGATG	2 cut(s)	473, 823
BtsI	GCAGTG	2 cut(s)	227, 1051
BtsIMutI	CAGTG	3 cut(s)	227, 543, 1051
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	622, 633
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	9 cut(s)	116, 144, 379, 442, 590, 842, 940, 1109, 1160
CsiI	ACCWGGT	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	288, 574, 795
CviAII	CATG	7 cut(s)	140, 307, 376, 392, 478, 850, 1150
CviQI	GTAC	3 cut(s)	288, 574, 795
DdeI	CTNAG	6 cut(s)	77, 569, 894, 911, 927, 1119
DpnI	GATC	6 cut(s)	69, 342, 359, 504, 565, 1088
DpnII	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	139, 477
Eco147I	AGGCCT	1 cut(s)	954
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	6 cut(s)	116, 144, 379, 442, 590, 1109
Eco57I	CTGAAG	2 cut(s)	804, 959
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	4 cut(s)	116, 590, 842, 1109
EcoRI	GAATTC	1 cut(s)	1050
EcoRII	CCWGG	3 cut(s)	118, 592, 954
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	139, 477
ErhI	CCWWGG	2 cut(s)	139, 477
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	7 cut(s)	143, 310, 379, 395, 481, 853, 1153
FaqI	GGGAC	3 cut(s)	209, 434, 1091
FatI	CATG	7 cut(s)	139, 306, 375, 391, 477, 849, 1149
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	411, 804, 919
FokI	GGATG	2 cut(s)	460, 830
Fsp4HI	GCNGC	3 cut(s)	411, 804, 919
FspBI	CTAG	3 cut(s)	302, 315, 1192
GluI	GCNGC	3 cut(s)	411, 804, 919
HaeIII	GGCC	5 cut(s)	492, 844, 941, 954, 1161
HapII	CCGG	1 cut(s)	1158
Hin1II	CATG	7 cut(s)	143, 310, 379, 395, 481, 853, 1153
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	6 cut(s)	85, 987, 1117, 1123, 1132, 1154
HpaII	CCGG	1 cut(s)	1158
HphI	GGTGA	7 cut(s)	128, 367, 608, 657, 833, 970, 1106
Hpy166II	GTNNAC	2 cut(s)	290, 382
Hpy188I	TCNGA	7 cut(s)	170, 220, 244, 759, 888, 1122, 1175
Hpy188III	TCNNGA	2 cut(s)	506, 1129
Hpy8I	GTNNAC	2 cut(s)	290, 382
HpyAV	CCTTC	5 cut(s)	833, 944, 955, 1004, 1100
HpyCH4III	ACNGT	5 cut(s)	458, 498, 538, 1003, 1171
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	7 cut(s)	107, 555, 624, 803, 921, 947, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 479, 641
HpyF3I	CTNAG	6 cut(s)	77, 569, 894, 911, 927, 1119
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	7 cut(s)	143, 310, 379, 395, 481, 853, 1153
KpnI	GGTACC	1 cut(s)	798
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	3 cut(s)	397, 815, 905
LweI	GCATC	3 cut(s)	482, 879, 1023
MabI	ACCWGGT	1 cut(s)	592
MaeI	CTAG	3 cut(s)	302, 315, 1192
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	5 cut(s)	123, 193, 694, 865, 997
MalI	GATC	6 cut(s)	69, 342, 359, 504, 565, 1088
MboI	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
MboII	GAAGA	3 cut(s)	746, 751, 797
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	5 cut(s)	90, 486, 725, 748, 1050
MlyI	GAGTC	3 cut(s)	94, 996, 1111
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	854
MspI	CCGG	1 cut(s)	1158
MspR9I	CCNGG	3 cut(s)	120, 594, 956
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	3 cut(s)	120, 594, 956
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	445, 479, 641
NcoI	CCATGG	2 cut(s)	139, 477
NdeII	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
NlaIII	CATG	7 cut(s)	143, 310, 379, 395, 481, 853, 1153
NlaIV	GGNNCC	4 cut(s)	145, 796, 1111, 1162
NmeAIII	GCCGAG	1 cut(s)	563
NmuCI	GTSAC	2 cut(s)	193, 997
PceI	AGGCCT	1 cut(s)	954
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	1123, 1132, 1154
PkrI	GCNGC	3 cut(s)	412, 805, 920
PleI	GAGTC	3 cut(s)	93, 995, 1111
PpsI	GAGTC	3 cut(s)	93, 995, 1111
PpuMI	RGGWCCY	3 cut(s)	116, 590, 1109
Psp5II	RGGWCCY	3 cut(s)	116, 590, 1109
Psp6I	CCWGG	3 cut(s)	118, 592, 954
PspGI	CCWGG	3 cut(s)	118, 592, 954
PspN4I	GGNNCC	4 cut(s)	145, 796, 1111, 1162
PspPI	GGNCC	9 cut(s)	116, 144, 379, 442, 590, 842, 940, 1109, 1160
PspPPI	RGGWCCY	3 cut(s)	116, 590, 1109
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	3 cut(s)	289, 575, 796
RsaNI	GTAC	3 cut(s)	288, 574, 795
RseI	CAYNNNNRTG	1 cut(s)	854
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	411, 804, 919
Sau3AI	GATC	6 cut(s)	67, 340, 357, 502, 563, 1086
Sau96I	GGNCC	9 cut(s)	116, 144, 379, 442, 590, 842, 940, 1109, 1160
SchI	GAGTC	3 cut(s)	94, 996, 1111
ScrFI	CCNGG	3 cut(s)	120, 594, 956
SexAI	ACCWGGT	1 cut(s)	592
SfaNI	GCATC	3 cut(s)	482, 879, 1023
SfcI	CTRYAG	2 cut(s)	336, 1065
SinI	GGWCC	6 cut(s)	116, 144, 379, 442, 590, 1109
SmiMI	CAYNNNNRTG	1 cut(s)	854
Sse9I	AATT	5 cut(s)	90, 486, 725, 748, 1050
SseBI	AGGCCT	1 cut(s)	954
SsiI	CCGC	4 cut(s)	147, 271, 731, 836
SspMI	CTAG	3 cut(s)	302, 315, 1192
StuI	AGGCCT	1 cut(s)	954
StyD4I	CCNGG	3 cut(s)	118, 592, 954
StyI	CCWWGG	2 cut(s)	139, 477
TaaI	ACNGT	5 cut(s)	458, 498, 538, 1003, 1171
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	4 cut(s)	176, 402, 505, 990
TasI	AATT	5 cut(s)	90, 486, 725, 748, 1050
TfiI	GAWTC	3 cut(s)	1123, 1132, 1154
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	3 cut(s)	234, 543, 1051
TseFI	GTSAC	2 cut(s)	193, 997
TseI	GCWGC	3 cut(s)	410, 803, 918
Tsp45I	GTSAC	2 cut(s)	193, 997
TspDTI	ATGAA	3 cut(s)	173, 752, 866
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	3 cut(s)	234, 543, 1051
VpaK11BI	GGWCC	6 cut(s)	116, 144, 379, 442, 590, 1109
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	1 cut(s)	1050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	3 cut(s)	302, 315, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.