MD11G1255500.v1.1

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001579
Physical Location & Seq
Forward (+)
36825229 .. 36827775
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1255500.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGGCAAGCCACAGCCCTTCTTCCGAAAAGAAATCAGATACATTGGAGGTTGGAGATGTCAATGATTTCAAAGTTCATGTGTTCAAATCATCATCCGAGTTGCTTGAAAAGCTGCATGACAAGTGGAGCCAAGTTGAAAAGAAACCATACCCAGCCATGTTCTCGAGCACTTATGGTGGAATTATTCTTGATCCAGCTTTGATGGTGATTCCAATTGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCGGTTATCTTAAACGGATTCATCTATGAACTTGATGTCCACCTAAACCGCTTCCTAAGATCATCTTCAAATGCGAAGATCTCCTCTCCTTTCCCTCGATCAACTCTTCGAACCATTCTTGTGCAACTGGCTGCAGCATCACAGATCAAGAAGGGATCTCTAAGATATTGGCTGAGTGCAGGTCCCGGAAACTTCTTGCTCTCTCCTACAGACCTGCCAACACCCGCTTTCTATGCAGTAGTAATTGATGAGGACTTTTCTCAGTGCAAAGAAGGGGTTAAAGTGATCACATCCACCATTCCCATGAAATCACCTGAGTTTGCAACAATGAAGAACGTGAACTACCTTCCAAATGTCCTTGCAAAATTGGAAGCCGAAGAGAAGGGAGCAAATGCTTCCATATGGGTTGATGAGGAAGGTTACATAGCAGAAGGTCCAAATGTGAATGTCGCTTTTATAACTCATGACAAGGAGCTTATAGTGCCCTTCTTCGATAAGATCCTTAGTGGGTGCACCGTGCTAAGGATGCTTGAACTAGCACCGAAGTTGGTTGAGCAGGGGCGCCTTAAAGCTATAAGGACTGCAAATCTAACTGTGGAAGAAGCCAAAAACTCAGCTGAAATGATGTATGTAGGAAGCACACTTCCTGTTTTGCCAATTATCGCGTGGGATGAACAACCTATTGGAGATGGAAAGGTGGGAGAATTGACAATGGCACTCTCAGATCTTGTTTGGGAGGATATGACAGCAGGTCCGGTTGGTACGCAGAGGACTGCTGTTCCTTATACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

351

Amino Acids

38.53

Weight (kDa)

5.29

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 82 - 308 3.6e-40 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
Acc36I ACCTGC 3 cut(s) 428, 480, 998
AccB1I GGYRCC 1 cut(s) 819
AccII CGCG 1 cut(s) 923
AciI CCGC 3 cut(s) 260, 307, 483
AclWI GGATC 3 cut(s) 185, 421, 751
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 1 cut(s) 1021
AfiI CCNNNNNNNGG 1 cut(s) 780
AgsI TTSAA 6 cut(s) 70, 85, 107, 137, 327, 791
AhdI GACNNNNNGTC 1 cut(s) 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 5 cut(s) 112, 197, 733, 830, 875
AluI AGCT 5 cut(s) 112, 197, 733, 830, 875
Alw21I GWGCWC 2 cut(s) 170, 773
Alw44I GTGCAC 1 cut(s) 769
AlwI GGATC 3 cut(s) 185, 421, 751
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 769
ApeKI GCWGC 3 cut(s) 112, 389, 392
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 3 cut(s) 440, 692, 1010
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 217, 561
AsuII TTCGAA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 3 cut(s) 440, 692, 1010
BaeGI GKGCMC 2 cut(s) 744, 773
BanI GGYRCC 1 cut(s) 819
Bbv12I GWGCWC 2 cut(s) 170, 773
BbvI GCAGC 3 cut(s) 99, 376, 404
BccI CCATC 2 cut(s) 196, 941
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 1 cut(s) 444
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 2 cut(s) 390, 465
BfoI RGCGCY 1 cut(s) 823
BfuAI ACCTGC 3 cut(s) 428, 480, 998
BglII AGATCT 2 cut(s) 336, 982
BisI GCNGC 3 cut(s) 113, 390, 393
BlsI GCNGC 3 cut(s) 114, 391, 394
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 3 cut(s) 440, 692, 1010
BmeRI GACNNNNNGTC 1 cut(s) 1008
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 440, 692, 1010
BmiI GGNNCC 3 cut(s) 128, 442, 821
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 404, 774
Bpu10I CCTNAGC 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 820
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse1I ACTGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 92, 548, 789, 934
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMII CTCAG 5 cut(s) 422, 533, 564, 885, 993
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 744, 773
BseXI GCAGC 3 cut(s) 99, 376, 404
BseYI CCCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 923
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 819
BsiHKAI GWGCWC 2 cut(s) 170, 773
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 444, 1013
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 780
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 3 cut(s) 170, 744, 773
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 260, 307, 483
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 5 cut(s) 423, 532, 565, 884, 992
BspFNI CGCG 1 cut(s) 923
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 128, 442, 821
BspMAI CTGCAG 1 cut(s) 394
BspMI ACCTGC 3 cut(s) 428, 480, 998
BspPI GGATC 3 cut(s) 185, 421, 751
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 819
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 775, 853
Bst6I CTCTTC 2 cut(s) 369, 630
BstACI GRCGYC 1 cut(s) 820
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 9 cut(s) 314, 419, 431, 519, 573, 761, 779, 871, 979
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 92, 548, 789, 934
BstFNI CGCG 1 cut(s) 923
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 1 cut(s) 822
BstMWI GCNNNNNNNGC 4 cut(s) 109, 491, 739, 784
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 390, 465
BstSLI GKGCMC 2 cut(s) 744, 773
BstUI CGCG 1 cut(s) 923
BstV1I GCAGC 3 cut(s) 99, 376, 404
BstX2I RGATCY 4 cut(s) 336, 413, 756, 982
BstYI RGATCY 4 cut(s) 336, 413, 756, 982
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 92, 548, 789, 934
BtsIMutI CAGTG 1 cut(s) 527
BveI ACCTGC 3 cut(s) 428, 480, 998
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 3 cut(s) 440, 692, 1010
Csp6I GTAC 1 cut(s) 1020
CviAII CATG 7 cut(s) 77, 116, 157, 226, 242, 562, 722
CviQI GTAC 1 cut(s) 1020
DdeI CTNAG 9 cut(s) 314, 419, 431, 519, 573, 761, 779, 871, 979
DinI GGCGCC 1 cut(s) 821
DriI GACNNNNNGTC 1 cut(s) 1008
Eam1104I CTCTTC 2 cut(s) 369, 630
Eam1105I GACNNNNNGTC 1 cut(s) 1008
EarI CTCTTC 2 cut(s) 369, 630
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 3 cut(s) 440, 692, 1010
Eco88I CYCGRG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 241
EgeI GGCGCC 1 cut(s) 821
EheI GGCGCC 1 cut(s) 821
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 426
FatI CATG 7 cut(s) 76, 115, 156, 225, 241, 561, 721
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 113, 390, 393
FokI GGATG 4 cut(s) 79, 535, 796, 941
Fsp4HI GCNGC 3 cut(s) 113, 390, 393
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 821
GluI GCNGC 3 cut(s) 113, 390, 393
GsaI CCCAGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 823
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 444, 1013
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HinfI GANTC 2 cut(s) 208, 276
HpaII CCGG 2 cut(s) 444, 1013
HphI GGTGA 2 cut(s) 217, 561
Hpy166II GTNNAC 3 cut(s) 298, 598, 771
Hpy188I TCNGA 4 cut(s) 25, 37, 97, 982
Hpy188III TCNNGA 4 cut(s) 163, 188, 406, 722
Hpy8I GTNNAC 3 cut(s) 298, 598, 771
HpyAV CCTTC 8 cut(s) 27, 403, 524, 614, 634, 668, 683, 754
HpyCH4III ACNGT 2 cut(s) 775, 853
HpyCH4IV ACGT 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 491, 739, 784
HpyF3I CTNAG 9 cut(s) 314, 419, 431, 519, 573, 761, 779, 871, 979
HpySE526I ACGT 1 cut(s) 594
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
HspAI GCGC 1 cut(s) 820
KasI GGCGCC 1 cut(s) 819
Ksp22I TGATCA 1 cut(s) 543
LmnI GCTCC 3 cut(s) 126, 644, 730
Lsp1109I GCAGC 3 cut(s) 99, 376, 404
LweI GCATC 2 cut(s) 404, 774
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 677
MboII GAAGA 8 cut(s) 12, 315, 346, 356, 601, 647, 739, 869
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 4 cut(s) 336, 413, 756, 982
MhlI GDGCHC 3 cut(s) 170, 744, 773
MluCI AATT 6 cut(s) 180, 213, 501, 623, 915, 962
Mly113I GGCGCC 1 cut(s) 820
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 8 cut(s) 40, 230, 352, 363, 502, 664, 988, 1020
MseI TTAA 3 cut(s) 269, 537, 825
MslI CAYNNNNRTG 2 cut(s) 377, 560
MspA1I CMGCKG 2 cut(s) 260, 875
MspI CCGG 2 cut(s) 444, 1013
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 213
MvnI CGCG 1 cut(s) 923
MwoI GCNNNNNNNGC 4 cut(s) 109, 491, 739, 784
NarI GGCGCC 1 cut(s) 820
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NlaIII CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
NlaIV GGNNCC 3 cut(s) 128, 442, 821
NspV TTCGAA 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 163
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 2 cut(s) 208, 276
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 3 cut(s) 114, 391, 394
PluTI GGCGCC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 440
PsiI TTATAA 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 128, 442, 821
PspPI GGNCC 3 cut(s) 440, 692, 1010
PspPPI RGGWCCY 1 cut(s) 440
PsrI GAACNNNNNNTAC 2 cut(s) 584, 616
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 4 cut(s) 336, 413, 756, 982
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 1 cut(s) 1021
RsaNI GTAC 1 cut(s) 1020
RseI CAYNNNNRTG 2 cut(s) 377, 560
SaqAI TTAA 3 cut(s) 269, 537, 825
SatI GCNGC 3 cut(s) 113, 390, 393
Sau96I GGNCC 3 cut(s) 440, 692, 1010
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 3 cut(s) 170, 744, 773
SfaNI GCATC 2 cut(s) 404, 774
SfcI CTRYAG 2 cut(s) 390, 465
SfoI GGCGCC 1 cut(s) 821
Sfr274I CTCGAG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 3 cut(s) 440, 692, 1010
SlaI CTCGAG 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 377, 560
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 6 cut(s) 180, 213, 501, 623, 915, 962
SsiI CCGC 3 cut(s) 260, 307, 483
SspDI GGCGCC 1 cut(s) 819
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 775, 853
TaiI ACGT 1 cut(s) 597
TaqI TCGA 5 cut(s) 164, 235, 355, 367, 750
TasI AATT 6 cut(s) 180, 213, 501, 623, 915, 962
TfiI GAWTC 2 cut(s) 208, 276
Tru1I TTAA 3 cut(s) 269, 537, 825
Tru9I TTAA 3 cut(s) 269, 537, 825
TscAI CASTG 1 cut(s) 527
TseI GCWGC 3 cut(s) 112, 389, 392
TspDTI ATGAA 7 cut(s) 65, 221, 268, 300, 578, 602, 945
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 769
VpaK11BI GGWCC 3 cut(s) 440, 692, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XhoI CTCGAG 1 cut(s) 163
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.