Rh7CG400800

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001579
Physical Location & Seq
Forward (+)
51228878 .. 51230329
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG400800.1

Sequence Viewer

Length: 909 bp
ATGTTTTTATTTATTGTGAATATACTTGGTGCGTTTGTTGTTGATTTACTTTCTATTGTTTGCTTTGTTGAAGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAGTGGAGCAAAGTAGGAAAGAAACCATACCCAGCCATGTATTCCAGCATTTATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGGGTCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGTGCTGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAGTCGGGGCGATGGGAAGGTGGGAGAATTGACAATGGCACTCTCCGATCTGGTGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

302

Amino Acids

33.42

Weight (kDa)

6.0

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 94 - 281 3.2e-34 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 2 cut(s) 343, 425
AclWI GGATC 4 cut(s) 221, 367, 380, 787
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 2 cut(s) 777, 808
AfiI CCNNNNNNNGG 2 cut(s) 390, 816
AgsI TTSAA 6 cut(s) 71, 121, 143, 363, 553, 827
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 7 cut(s) 148, 233, 325, 359, 668, 746, 769
AluI AGCT 7 cut(s) 148, 233, 325, 359, 668, 746, 769
AlwI GGATC 4 cut(s) 221, 367, 380, 787
AoxI GGCC 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 2 cut(s) 476, 728
AsuHPI GGTGA 3 cut(s) 253, 494, 597
AvaII GGWCC 2 cut(s) 476, 728
BaeGI GKGCMC 1 cut(s) 512
BamHI GGATCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 678
BccI CCATC 3 cut(s) 232, 342, 852
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 1 cut(s) 305
BclI TGATCA 1 cut(s) 579
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 2 cut(s) 476, 728
BmgT120I GGNCC 2 cut(s) 476, 728
BmiI GGNNCC 3 cut(s) 374, 509, 682
BmrFI CCNGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 277, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 816
Bse1I ACTGG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 277, 796
BseGI GGATG 3 cut(s) 334, 471, 709
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 390, 816
BseMII CTCAG 2 cut(s) 123, 364
BseNI ACTGG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 512
BseYI CCCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 390, 816
BsmI GAATGC 2 cut(s) 408, 521
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 343, 425
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 124, 363
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 374, 509, 682
BspPI GGATC 4 cut(s) 221, 367, 380, 787
BspT107I GGYRCC 1 cut(s) 507
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 277, 796
BssMI GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
BssT1I CCWWGG 2 cut(s) 277, 796
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 811
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 132, 350, 455
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 3 cut(s) 334, 471, 709
BstKTI GATC 9 cut(s) 229, 259, 356, 375, 391, 441, 582, 795, 896
BstMBI GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
BstMWI GCNNNNNNNGC 3 cut(s) 145, 365, 527
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 372, 792
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 2 cut(s) 372, 792
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 3 cut(s) 334, 471, 709
BtsIMutI CAGTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 476, 728
Csp6I GTAC 2 cut(s) 776, 807
CviAII CATG 7 cut(s) 113, 152, 193, 262, 278, 598, 758
CviQI GTAC 2 cut(s) 776, 807
DdeI CTNAG 3 cut(s) 132, 350, 455
DpnI GATC 9 cut(s) 228, 258, 355, 374, 390, 440, 581, 794, 895
DpnII GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 277, 796
Eco47I GGWCC 2 cut(s) 476, 728
Eco57I CTGAAG 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 277, 796
ErhI CCWWGG 2 cut(s) 277, 796
FaeI CATG 7 cut(s) 116, 155, 196, 265, 281, 601, 761
FatI CATG 7 cut(s) 112, 151, 192, 261, 277, 597, 757
FauNDI CATATG 1 cut(s) 695
FbaI TGATCA 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 341, 478, 716
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 830
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 7 cut(s) 116, 155, 196, 265, 281, 601, 761
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 74, 216, 244, 848
HphI GGTGA 3 cut(s) 253, 494, 597
Hpy166II GTNNAC 2 cut(s) 396, 634
Hpy188I TCNGA 5 cut(s) 133, 353, 405, 645, 893
Hpy188III TCNNGA 4 cut(s) 152, 224, 442, 824
Hpy8I GTNNAC 2 cut(s) 396, 634
HpyAV CCTTC 6 cut(s) 560, 650, 703, 719, 790, 857
HpyCH4III ACNGT 1 cut(s) 811
HpyCH4V TGCA 5 cut(s) 418, 521, 530, 561, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 365, 527
HpyF3I CTNAG 3 cut(s) 132, 350, 455
Hsp92II CATG 7 cut(s) 116, 155, 196, 265, 281, 601, 761
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
LmnI GCTCC 5 cut(s) 162, 405, 498, 680, 766
MaeI CTAG 1 cut(s) 830
MaeIII GTNAC 3 cut(s) 432, 603, 713
MalI GATC 9 cut(s) 228, 258, 355, 374, 390, 440, 581, 794, 895
MboI GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
MboII GAAGA 4 cut(s) 83, 392, 637, 683
MflI RGATCY 2 cut(s) 372, 792
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 1 cut(s) 873
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 2 cut(s) 67, 520
MnlI CCTC 7 cut(s) 76, 91, 266, 359, 388, 538, 598
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 4 cut(s) 105, 305, 573, 815
MslI CAYNNNNRTG 2 cut(s) 413, 698
MspR9I CCNGG 1 cut(s) 480
Mva1269I GAATGC 2 cut(s) 408, 521
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 145, 365, 527
NcoI CCATGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 695
NdeII GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
NlaIII CATG 7 cut(s) 116, 155, 196, 265, 281, 601, 761
NlaIV GGNNCC 3 cut(s) 374, 509, 682
NmuCI GTSAC 2 cut(s) 432, 603
PagI TCATGA 1 cut(s) 151
PctI GAATGC 2 cut(s) 408, 521
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 74, 216, 244
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
PsiI TTATAA 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 3 cut(s) 374, 509, 682
PspPI GGNCC 2 cut(s) 476, 728
PsuI RGATCY 2 cut(s) 372, 792
RsaI GTAC 2 cut(s) 777, 808
RsaNI GTAC 2 cut(s) 776, 807
RseI CAYNNNNRTG 2 cut(s) 413, 698
SaqAI TTAA 4 cut(s) 105, 305, 573, 815
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 9 cut(s) 226, 256, 353, 372, 388, 438, 579, 792, 893
Sau96I GGNCC 2 cut(s) 476, 728
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 1 cut(s) 512
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 476, 728
SmiMI CAYNNNNRTG 2 cut(s) 413, 698
Sse9I AATT 1 cut(s) 873
SsiI CCGC 2 cut(s) 343, 425
SspMI CTAG 1 cut(s) 830
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 2 cut(s) 277, 796
TaaI ACNGT 1 cut(s) 811
TaqI TCGA 2 cut(s) 96, 271
TaqII GACCGA 1 cut(s) 381
TasI AATT 1 cut(s) 873
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 3 cut(s) 74, 216, 244
Tru1I TTAA 4 cut(s) 105, 305, 573, 815
Tru9I TTAA 4 cut(s) 105, 305, 573, 815
TscAI CASTG 1 cut(s) 563
TseFI GTSAC 2 cut(s) 432, 603
Tsp45I GTSAC 2 cut(s) 432, 603
TspDTI ATGAA 6 cut(s) 66, 101, 140, 257, 614, 638
TspRI CASTG 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 476, 728
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.