Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Forward (+)

32105148 .. 32106724

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAAGCCACAGCTCTTCTTCTGACAAGAAATCAGATACATTAGAGGCTGGAGATGTCAATGATTTCAAAGTTCATGTGTTCAAATCTTCATCCAAGATGCTTGAAAAGCTGCATGAGAAGTGGAGCCAAGTTGAAAAGAAACCATACCCAGCCATGTACTCGAGCACTTATGGTGGAATTATTCTTGATCCAGCTTTGATGGTGATTCCAATTGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACGGCGATTATCTTAAACGGATTCATCTATGAACTTGATGTCCACCTAAACCGCTTCCTAAGATCATCTTCAAAAGCGAAGATCTCCTCTCCTTTCCCTCGGTCAACTCTTCGAACCATTCTTGTGCAACTGGCCGCAGCATCGCAGATCAAGAAAGGAACTCTAAGATATTGGCTGAGTGCAGGTCCTGGAAACTTCTTGCTCTCACCTACAGAGTTGCCAACATCCGCGTTCTATGCTGTAGTCATTGACGAGGACTTTTCTCAGTGCAAAGAAGGGGTTAAAGTGATCACATCCACCATTCCGATGAAGTCACCTGAATTTGCAACAATGAAGAATGTACCTTCCGAATGTCCTTGCAAAACTGGAAGCCGAAGAAAAGGGAGCAAATGCTTCCATATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

221

Amino Acids

24.36

Weight (kDa)

9.2

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	82 - 171	1.7e-12	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
AccII	CGCG	1 cut(s)	485
AciI	CCGC	3 cut(s)	307, 390, 483
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	2 cut(s)	161, 597
AgsI	TTSAA	5 cut(s)	70, 85, 107, 137, 327
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	3 cut(s)	15, 112, 197
AluI	AGCT	3 cut(s)	15, 112, 197
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	238, 387
ApeKI	GCWGC	2 cut(s)	112, 392
ApoI	RAATTY	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	217, 453, 561
AsuII	TTCGAA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	99, 404
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	465, 495
BfuAI	ACCTGC	1 cut(s)	428
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	3 cut(s)	113, 390, 393
BlsI	GCNGC	3 cut(s)	114, 391, 394
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	90, 404
BpmI	CTGGAG	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	241, 353
Bse1I	ACTGG	2 cut(s)	390, 625
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	241, 353
BseGI	GGATG	3 cut(s)	92, 479, 548
BseMII	CTCAG	2 cut(s)	422, 533
BseNI	ACTGG	2 cut(s)	390, 625
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	99, 404
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	2 cut(s)	240, 389
BsiHKAI	GWGCWC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	163
BsnI	GGCC	2 cut(s)	240, 389
BsoBI	CYCGRG	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	3 cut(s)	307, 390, 483
BspANI	GGCC	2 cut(s)	240, 389
BspCNI	CTCAG	2 cut(s)	423, 532
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	390, 625
BssECI	CCNNGG	2 cut(s)	241, 353
BssMI	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	444
Bst6I	CTCTTC	2 cut(s)	22, 369
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	314, 419, 431, 519
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	92, 479, 548
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	6 cut(s)	193, 223, 320, 339, 405, 546
BstMBI	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 491
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	2 cut(s)	465, 495
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	99, 404
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	240, 389
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	92, 479, 548
BtsIMutI	CAGTG	1 cut(s)	527
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	160, 596
CviAII	CATG	5 cut(s)	77, 116, 157, 226, 242
CviQI	GTAC	2 cut(s)	160, 596
DdeI	CTNAG	4 cut(s)	314, 419, 431, 519
DpnI	GATC	6 cut(s)	192, 222, 319, 338, 404, 545
DpnII	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	22, 369
EarI	CTCTTC	2 cut(s)	22, 369
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	5 cut(s)	80, 119, 160, 229, 245
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	5 cut(s)	76, 115, 156, 225, 241
FauNDI	CATATG	1 cut(s)	654
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	113, 390, 393
FokI	GGATG	3 cut(s)	79, 466, 535
Fsp4HI	GCNGC	3 cut(s)	113, 390, 393
GluI	GCNGC	3 cut(s)	113, 390, 393
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	240, 389
Hin1II	CATG	5 cut(s)	80, 119, 160, 229, 245
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	208, 276
HphI	GGTGA	3 cut(s)	217, 453, 561
Hpy166II	GTNNAC	2 cut(s)	298, 360
Hpy188I	TCNGA	4 cut(s)	25, 37, 561, 604
Hpy188III	TCNNGA	2 cut(s)	188, 406
Hpy8I	GTNNAC	2 cut(s)	298, 360
HpyAV	CCTTC	2 cut(s)	524, 609
HpyCH4V	TGCA	6 cut(s)	115, 382, 437, 525, 581, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 491
HpyF3I	CTNAG	4 cut(s)	314, 419, 431, 519
Hsp92II	CATG	5 cut(s)	80, 119, 160, 229, 245
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	126, 639
LpnPI	CCDG	9 cut(s)	36, 165, 207, 371, 423, 429, 456, 585, 606
Lsp1109I	GCAGC	2 cut(s)	99, 404
LweI	GCATC	2 cut(s)	90, 404
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	6 cut(s)	192, 222, 319, 338, 404, 545
MboI	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
MboII	GAAGA	8 cut(s)	9, 12, 81, 315, 346, 356, 601, 642
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	3 cut(s)	180, 213, 575
MnlI	CCTC	5 cut(s)	40, 230, 352, 363, 502
MseI	TTAA	2 cut(s)	269, 537
MslI	CAYNNNNRTG	2 cut(s)	377, 560
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	109, 491
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
NlaIII	CATG	5 cut(s)	80, 119, 160, 229, 245
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	208, 276
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	114, 391, 394
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	440
PspPPI	RGGWCCY	1 cut(s)	440
PspXI	VCTCGAGB	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	161, 597
RsaNI	GTAC	2 cut(s)	160, 596
RseI	CAYNNNNRTG	2 cut(s)	377, 560
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	269, 537
SatI	GCNGC	3 cut(s)	113, 390, 393
Sau3AI	GATC	6 cut(s)	190, 220, 317, 336, 402, 543
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	8 cut(s)	17, 114, 199, 303, 442, 466, 574, 601
SfaNI	GCATC	2 cut(s)	90, 404
SfcI	CTRYAG	2 cut(s)	465, 495
Sfr274I	CTCGAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	377, 560
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	180, 213, 575
SsiI	CCGC	3 cut(s)	307, 390, 483
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	241
TaqI	TCGA	3 cut(s)	164, 235, 367
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	180, 213, 575
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	208, 276
Tru1I	TTAA	2 cut(s)	269, 537
Tru9I	TTAA	2 cut(s)	269, 537
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	2 cut(s)	112, 392
Tsp45I	GTSAC	1 cut(s)	567
TspDTI	ATGAA	7 cut(s)	65, 81, 221, 268, 300, 578, 602
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.